HL_6HRM_068

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6HRM|1|1|C|2999, 6HRM|1|1|U|3003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_068 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.0996

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6HRM|1|1|G|2998
6HRM|1|1|C|2999
6HRM|1|1|A|3000
6HRM|1|1|A|3001
6HRM|1|1|A|3002
6HRM|1|1|U|3003
6HRM|1|1|C|3004

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2