HL_6HRM_071

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

6HRM|1|1|A|3120, 6HRM|1|1|A|3122

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_071 not in the Motif Atlas

Geometric match to HL_4WF9_038

Geometric discrepancy: 0.0855

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

6HRM|1|1|C|3118
6HRM|1|1|G|3119
6HRM|1|1|A|3120
6HRM|1|1|C|3121
6HRM|1|1|A|3122
6HRM|1|1|C|3123
6HRM|1|1|6MZ|3124
6HRM|1|1|G|3125

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34