HL_6HRM_074

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6HRM|1|1|U|3235, 6HRM|1|1|C|3238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_074 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3342

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|C|3233
6HRM|1|1|C|3234
6HRM|1|1|U|3235
6HRM|1|1|C|3236
6HRM|1|1|G|3237
6HRM|1|1|C|3238
6HRM|1|1|G|3239

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains