HL_6HRM_091

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

6HRM|1|1|U|3979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_091 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.1429

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6HRM|1|1|A|3977
6HRM|1|1|G|3978
6HRM|1|1|U|3979
6HRM|1|1|U|3980
6HRM|1|1|C|3981
6HRM|1|1|A|3982
6HRM|1|1|U|3983
6HRM|1|1|A|3984
6HRM|1|1|U|3985

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain M

50S ribosomal protein L16

Chain f

50S ribosomal protein L36