HL_6HRM_098

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6HRM|1|1|U|4303, 6HRM|1|1|A|4306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HRM_098 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.1977

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|C|4301
6HRM|1|1|U|4302
6HRM|1|1|U|4303
6HRM|1|1|U|4304
6HRM|1|1|A|4305
6HRM|1|1|A|4306
6HRM|1|1|G|4307

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains