HL_6HTQ_032

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

6HTQ|1|A|C|1364, 6HTQ|1|A|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_032 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.3191

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6HTQ|1|A|G|1363
6HTQ|1|A|C|1364
6HTQ|1|A|U|1365
6HTQ|1|A|C|1366
6HTQ|1|A|G|1367
6HTQ|1|A|U|1368
6HTQ|1|A|C|1369

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22