6HTQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HTQ_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.2 | |
| HL_6HTQ_003 | 1/A/122:127 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6HTQ_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.3 | |
| HL_6HTQ_005 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_6HTQ_130 | 1/A/189:213 | No text annotation | ||
| HL_6HTQ_006 | 1/A/191:211 | No text annotation | ||
| HL_6HTQ_007 | 1/A/228:233 | No text annotation | homologous HL_4WF9_007 HL_51020.2 | |
| HL_6HTQ_008 | 1/A/249:255 | No text annotation | homologous HL_7A0S_008 HL_76371.2 | |
| HL_6HTQ_010 | 1/A/349:356 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.3 | |
| HL_6HTQ_012 | 1/A/371:379 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.4 | |
| HL_6HTQ_013 | 1/A/457:464 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6HTQ_014 | 1/A/509:514 | GNRA | homologous HL_4WF9_015 HL_34789.4 | |
| HL_6HTQ_016 | 1/A/588:595 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6HTQ_017 | 1/A/610:619 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.3 | |
| HL_6HTQ_018 | 1/A/656:662 | GNRA | geometric HL_5J7L_026 NA | |
| HL_6HTQ_115 | 1/A/674:681 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.2 | |
| HL_6HTQ_019 | 1/A/675:680 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6HTQ_020 | 1/A/687:693 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6HTQ_021 | 1/A/759:766 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_6HTQ_022 | 1/A/791:800 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_6HTQ_117 | 1/A/824:834 | No text annotation | ||
| HL_6HTQ_023 | 1/A/825:833 | No text annotation | geometric HL_6CF2_001 HL_92598.1 | |
| HL_6HTQ_024 | 1/A/873:878 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6HTQ_026 | 1/A/1001:1008 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6HTQ_131 | 1/A/1024:1031 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_6HTQ_030 | 1/A/1262:1267 | GNRA | homologous HL_7A0S_031 HL_34789.4 | |
| HL_6HTQ_031 | 1/A/1320:1328 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6HTQ_132 | 1/A/1358:1372 | No text annotation | ||
| HL_6HTQ_032 | 1/A/1363:1369 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6HTQ_033 | 1/A/1396:1413 | No text annotation | geometric HL_361D_002 NA | |
| HL_6HTQ_034 | 1/A/1428:1437 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_6HTQ_133 | 1/A/1497:1508 | No text annotation | ||
| HL_6HTQ_038 | 1/A/1613:1616 | Mini UNCG | homologous HL_7A0S_039 HL_90436.3 | |
| HL_6HTQ_039 | 1/A/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6HTQ_040 | 1/A/1675:1681 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6HTQ_041 | 1/A/1736:1741 | UNCG | geometric HL_6SY6_001 HL_61337.4 | |
| HL_6HTQ_043 | 1/A/1781:1785 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6HTQ_044 | 1/A/1806:1816 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_6HTQ_045 | 1/A/1833:1842 | No text annotation | geometric HL_4V9F_011 HL_75660.8 | |
| HL_6HTQ_047 | 1/A/1939:1949 | No text annotation | ||
| HL_6HTQ_120 | 1/A/1977:1987 | No text annotation | ||
| HL_6HTQ_048 | 1/A/1978:1986 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_6HTQ_134 | 1/A/2056:2065 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_6HTQ_121 | 1/A/2237:2245 | No text annotation | homologous HL_4WF9_069 NA | |
| HL_6HTQ_051 | 1/A/2238:2244 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6HTQ_052 | 1/A/2277:2285 | No text annotation | homologous HL_7A0S_052 HL_11974.2 | |
| HL_6HTQ_053 | 1/A/2293:2305 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6HTQ_054 | 1/A/2332:2342 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_6HTQ_055 | 1/A/2353:2360 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_6HTQ_056 | 1/A/2384:2391 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.2 | |
| HL_6HTQ_057 | 1/A/2403:2408 | GNRA | homologous HL_4WF9_054 HL_34789.4 | |
| HL_6HTQ_058 | 1/A/2433:2442 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6HTQ_059 | 1/A/2500:2508 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_6HTQ_060 | 1/A/2557:2564 | GNRA variation | homologous HL_4WF9_057 HL_46665.2 | |
| HL_6HTQ_061 | 1/A/2580:2586 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_6HTQ_062 | 1/A/2623:2628 | GNRA | homologous HL_4WF9_059 HL_34789.4 | |
| HL_6HTQ_064 | 1/A/2730:2735 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.2 | |
| HL_6HTQ_065 | 1/A/2774:2788 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_6HTQ_067 | 1/A/2843:2853 | No text annotation | ||
| HL_6HTQ_068 | 1/A/2881:2886 | GNRA | homologous HL_7A0S_068 HL_34789.4 | |
| HL_6HTQ_069 | 1/B/36:42 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_6HTQ_135 | 1/B/83:89 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_6HTQ_070 | 1/B/84:88 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_6HTQ_071 | 1/a/14:24 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_6HTQ_076 | 1/a/267:275 | GNRA related | homologous HL_4LFB_006 HL_87268.2 | |
| HL_6HTQ_077 | 1/a/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_6HTQ_078 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6HTQ_136 | 1/a/516:533 | No text annotation | ||
| HL_6HTQ_083 | 1/a/531:536 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_6HTQ_084 | 1/a/626:632 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_6HTQ_085 | 1/a/697:708 | No text annotation | ||
| HL_6HTQ_086 | 1/a/735:740 | GNRA | homologous HL_4LFB_016 HL_34789.4 | |
| HL_6HTQ_087 | 1/a/795:805 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_6HTQ_089 | 1/a/872:877 | GNRA | homologous HL_4LFB_019 HL_34789.4 | |
| HL_6HTQ_090 | 1/a/907:912 | GNRA | homologous HL_6CZR_091 NA | |
| HL_6HTQ_091 | 1/a/973:982 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6HTQ_137 | 1/a/1086:1091 | GNRA | homologous HL_5J7L_023 NA | |
| HL_6HTQ_095 | 1/a/1099:1106 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_6HTQ_098 | 1/a/1274:1279 | GNRA | homologous HL_5J7L_027 NA | |
| HL_6HTQ_099 | 1/a/1323:1332 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6HTQ_138 | 1/a/1365:1375 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_6HTQ_102 | 1/a/1525:1530 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6HTQ_107 | 1/v/32:40 | tRNA anticodon loop | homologous HL_6UFG_007 HL_81376.3 | |
| HL_6HTQ_109 | 1/v/64:72 | T-loop with 2 stacked bulged bases | homologous HL_2BTE_004 NA | |
| HL_6HTQ_111 | 1/w/30:40 | No text annotation | homologous HL_4V7M_039 HL_14063.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HTQ_001 | No text annotation | ||
| HL_6HTQ_113 | No text annotation | ||
| HL_6HTQ_114 | No text annotation | ||
| HL_6HTQ_009 | No text annotation | ||
| HL_6HTQ_011 | No text annotation | ||
| HL_6HTQ_015 | GNRA | ||
| HL_6HTQ_116 | Anticodon loop related | ||
| HL_6HTQ_025 | No text annotation | ||
| HL_6HTQ_027 | No text annotation | ||
| HL_6HTQ_028 | No text annotation | ||
| HL_6HTQ_029 | No text annotation | ||
| HL_6HTQ_118 | GNRA wlth tandem sheared | ||
| HL_6HTQ_119 | No text annotation | ||
| HL_6HTQ_035 | No text annotation | ||
| HL_6HTQ_036 | Pseudoknot geometry with 3' bulge | ||
| HL_6HTQ_037 | No text annotation | ||
| HL_6HTQ_042 | No text annotation | ||
| HL_6HTQ_046 | GNRA | ||
| HL_6HTQ_049 | No text annotation | ||
| HL_6HTQ_050 | UNCG | ||
| HL_6HTQ_063 | GNRA | ||
| HL_6HTQ_066 | GNRA | ||
| HL_6HTQ_122 | No text annotation | ||
| HL_6HTQ_072 | No text annotation | ||
| HL_6HTQ_073 | GNRA | ||
| HL_6HTQ_074 | GNRA variation | ||
| HL_6HTQ_075 | UNCG | ||
| HL_6HTQ_123 | No text annotation | ||
| HL_6HTQ_079 | UNCG | ||
| HL_6HTQ_124 | tRNA anticodon loop | ||
| HL_6HTQ_080 | GNRA | ||
| HL_6HTQ_081 | UNCG | ||
| HL_6HTQ_082 | GNRA | ||
| HL_6HTQ_125 | No text annotation | ||
| HL_6HTQ_126 | tRNA anticodon loop | ||
| HL_6HTQ_088 | No text annotation | ||
| HL_6HTQ_092 | GNRA | ||
| HL_6HTQ_093 | UNCG variation | ||
| HL_6HTQ_094 | No text annotation | ||
| HL_6HTQ_127 | No text annotation | ||
| HL_6HTQ_096 | No text annotation | ||
| HL_6HTQ_097 | GNRA | ||
| HL_6HTQ_100 | No text annotation | ||
| HL_6HTQ_101 | No text annotation | ||
| HL_6HTQ_103 | No text annotation | ||
| HL_6HTQ_128 | tRNA D-loop | ||
| HL_6HTQ_104 | tRNA anticodon loop | ||
| HL_6HTQ_105 | No text annotation | ||
| HL_6HTQ_129 | No text annotation | ||
| HL_6HTQ_106 | No text annotation | ||
| HL_6HTQ_108 | GNRA | ||
| HL_6HTQ_110 | tRNA D-loop | ||
| HL_6HTQ_112 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HTQ_001 | 1/A/24:30, 1/A/556:562 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.1 | |
| IL_6HTQ_002 | 1/A/36:37, 1/A/489:491 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_6HTQ_003 | 1/A/42:44, 1/A/481:484 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
| IL_6HTQ_170 | 1/A/56:76, 1/A/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_6HTQ_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6HTQ_006 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_7A0S_005 IL_15011.3 | |
| IL_6HTQ_171 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.3 | |
| IL_6HTQ_008 | 1/A/300:302, 1/A/416:451 | No text annotation | ||
| IL_6HTQ_011 | 1/A/344:346, 1/A/359:360 | No text annotation | ||
| IL_6HTQ_012 | 1/A/528:531, 1/A/542:555 | No text annotation | homologous IL_7A0S_009 IL_44923.1 | |
| IL_6HTQ_218 | 1/A/582:585, 1/A/598:601 | Double sheared | homologous IL_4WF9_016 IL_58355.2 | |
| IL_6HTQ_014 | 1/A/608:610, 1/A/619:621 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.3 | |
| IL_6HTQ_015 | 1/A/639:641, 1/A/707:709 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.3 | |
| IL_6HTQ_219 | 1/A/650:654, 1/A/664:668 | No text annotation | homologous IL_9DFE_014 IL_66798.3 | |
| IL_6HTQ_017 | 1/A/719:721, 1/A/853:855 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.4 | |
| IL_6HTQ_018 | 1/A/721:725, 1/A/846:853 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_6HTQ_220 | 1/A/721:727, 1/A/844:853 | No text annotation | ||
| IL_6HTQ_175 | 1/A/729:736, 1/A/820:842 | No text annotation | ||
| IL_6HTQ_019 | 1/A/749:750, 1/A/775:777 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6HTQ_020 | 1/A/750:754, 1/A/771:775 | Triple sheared | geometric IL_5J7L_310 NA | |
| IL_6HTQ_221 | 1/A/784:787, 1/A/804:806 | No text annotation | geometric IL_7SZU_003 IL_75527.2 | |
| IL_6HTQ_022 | 1/A/884:885, 1/A/986:988 | Single stack bend | homologous IL_7A0S_022 IL_15011.3 | |
| IL_6HTQ_023 | 1/A/891:895, 1/A/977:980 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_6HTQ_025 | 1/A/903:909, 1/A/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.1 | |
| IL_6HTQ_223 | 1/A/909:910, 1/A/960:962 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_6HTQ_027 | 1/A/911:915, 1/A/956:959 | C-loop | geometric IL_1KOG_007 IL_63596.12 | |
| IL_6HTQ_179 | 1/A/995:1001, 1/A/1008:1014 | No text annotation | ||
| IL_6HTQ_030 | 1/A/998:1001, 1/A/1008:1011 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.2 | |
| IL_6HTQ_180 | 1/A/1040:1043, 1/A/1204:1206 | Isolated non-canonical cWW pair | geometric IL_4V9F_023 IL_01003.4 | |
| IL_6HTQ_032 | 1/A/1044:1048, 1/A/1199:1203 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_6HTQ_033 | 1/A/1050:1059, 1/A/1195:1197 | Isolated non-canonical cWW pair | geometric IL_4V88_417 NA | |
| IL_6HTQ_034 | 1/A/1064:1070, 1/A/1186:1190 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_6HTQ_181 | 1/A/1064:1076, 1/A/1170:1190 | No text annotation | ||
| IL_6HTQ_035 | 1/A/1070:1076, 1/A/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_6HTQ_036 | 1/A/1077:1080, 1/A/1167:1169 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6HTQ_039 | 1/A/1237:1239, 1/A/1287:1290 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.5 | |
| IL_6HTQ_040 | 1/A/1243:1247, 1/A/1279:1283 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6HTQ_182 | 1/A/1248:1255, 1/A/1274:1278 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_6HTQ_224 | 1/A/1259:1261, 1/A/1268:1270 | Intercalated cWW | homologous IL_7A0S_044 IL_53541.1 | |
| IL_6HTQ_043 | 1/A/1302:1309, 1/A/2040:2046 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6HTQ_225 | 1/A/1349:1352, 1/A/1648:1649 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.2 | |
| IL_6HTQ_044 | 1/A/1357:1363, 1/A/1369:1373 | No text annotation | ||
| IL_6HTQ_045 | 1/A/1390:1394, 1/A/1415:1419 | UAA/GAN | homologous IL_4WF9_051 IL_89021.4 | |
| IL_6HTQ_049 | 1/A/1478:1481, 1/A/1605:1609 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_6HTQ_184 | 1/A/1482:1486, 1/A/1599:1604 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_6HTQ_051 | 1/A/1488:1490, 1/A/1596:1597 | Major groove platform | geometric IL_5Y85_005 IL_48076.8 | |
| IL_6HTQ_055 | 1/A/1535:1537, 1/A/1545:1546 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_6HTQ_057 | 1/A/1696:1701, 1/A/2033:2035 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_6HTQ_187 | 1/A/1705:1719, 1/A/2019:2029 | No text annotation | ||
| IL_6HTQ_058 | 1/A/1706:1719, 1/A/2019:2028 | No text annotation | ||
| IL_6HTQ_059 | 1/A/1731:1736, 1/A/1741:1747 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6HTQ_060 | 1/A/1756:1761, 1/A/1772:1776 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_6HTQ_061 | 1/A/1799:1800, 1/A/2009:2011 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6HTQ_062 | 1/A/1827:1833, 1/A/1842:1850 | Kink-turn related | homologous IL_4WF9_069 IL_17069.6 | |
| IL_6HTQ_063 | 1/A/1866:1869, 1/A/1931:1932 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6HTQ_226 | 1/A/1870:1871, 1/A/1927:1930 | Major groove intercalation | homologous IL_4WF9_071 IL_71421.3 | |
| IL_6HTQ_065 | 1/A/1875:1878, 1/A/1922:1923 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_73108.2 | |
| IL_6HTQ_227 | 1/A/1875:1884, 1/A/1916:1923 | No text annotation | ||
| IL_6HTQ_066 | 1/A/1879:1884, 1/A/1916:1921 | No text annotation | ||
| IL_6HTQ_067 | 1/A/1885:1889, 1/A/1911:1915 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6HTQ_068 | 1/A/1893:1896, 1/A/1903:1907 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_6HTQ_228 | 1/A/2079:2081, 1/A/2646:2647 | Major groove platform | homologous IL_9DFE_078 IL_48076.8 | |
| IL_6HTQ_070 | 1/A/2083:2085, 1/A/2641:2644 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6HTQ_071 | 1/A/2096:2098, 1/A/2471:2472 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6HTQ_229 | 1/A/2099:2100, 1/A/2467:2470 | Minor groove platform | homologous IL_7A0S_076 IL_34520.3 | |
| IL_6HTQ_073 | 1/A/2110:2112, 1/A/2265:2268 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6HTQ_076 | 1/A/2231:2233, 1/A/2249:2250 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6HTQ_195 | 1/A/2379:2382, 1/A/2393:2396 | Double sheared | homologous IL_4WF9_087 IL_58355.2 | |
| IL_6HTQ_230 | 1/A/2430:2432, 1/A/2443:2444 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_6HTQ_079 | 1/A/2482:2483, 1/A/2527:2529 | Single stack bend | geometric IL_7A0S_083 IL_15011.3 | |
| IL_6HTQ_080 | 1/A/2483:2484, 1/A/2525:2527 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6HTQ_081 | 1/A/2486:2488, 1/A/2522:2523 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_6HTQ_082 | 1/A/2488:2490, 1/A/2518:2522 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_36931.2 | |
| IL_6HTQ_083 | 1/A/2495:2499, 1/A/2509:2513 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.2 | |
| IL_6HTQ_084 | 1/A/2539:2541, 1/A/2603:2607 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.4 | |
| IL_6HTQ_085 | 1/A/2541:2542, 1/A/2600:2603 | No text annotation | geometric IL_4WF9_096 IL_44609.2 | |
| IL_6HTQ_231 | 1/A/2551:2552, 1/A/2569:2572 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.2 | |
| IL_6HTQ_087 | 1/A/2620:2621, 1/A/2630:2632 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_6HTQ_088 | 1/A/2665:2669, 1/A/2803:2811 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_6HTQ_089 | 1/A/2681:2687, 1/A/2692:2697 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6HTQ_090 | 1/A/2709:2713, 1/A/2754:2756 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6HTQ_091 | 1/A/2716:2720, 1/A/2747:2751 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_6HTQ_092 | 1/A/2724:2725, 1/A/2740:2743 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6HTQ_093 | 1/A/2766:2771, 1/A/2791:2796 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6HTQ_095 | 1/A/2868:2870, 1/A/2896:2899 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_6HTQ_232 | 1/A/2872:2877, 1/A/2890:2894 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_6HTQ_097 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
| IL_6HTQ_101 | 1/B/69:77, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6HTQ_102 | 1/B/77:80, 1/B/92:95 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.2 | |
| IL_6HTQ_103 | 1/a/32:34, 1/a/561:562 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_6HTQ_199 | 1/a/46:47, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_6HTQ_105 | 1/a/49:54, 1/a/367:369 | No text annotation | geometric IL_6CZR_115 NA | |
| IL_6HTQ_106 | 1/a/56:58, 1/a/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_34520.3 | |
| IL_6HTQ_107 | 1/a/65:68, 1/a/101:102 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_6HTQ_234 | 1/a/69:71, 1/a/98:100 | No text annotation | ||
| IL_6HTQ_112 | 1/a/131:135, 1/a/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_6HTQ_114 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_6HTQ_236 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_6HTQ_116 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6HTQ_117 | 1/a/375:377, 1/a/400:401 | Single bulged U | geometric IL_6CZR_126 NA | |
| IL_6HTQ_118 | 1/a/379:383, 1/a/397:398 | C-loop | homologous IL_5J7L_018 NA | |
| IL_6HTQ_119 | 1/a/383:384, 1/a/395:397 | Single bulged G | geometric IL_4LFB_016 IL_28408.2 | |
| IL_6HTQ_124 | 1/a/513:520, 1/a/549:550 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_6HTQ_204 | 1/a/513:514, 1/a/535:550 | No text annotation | ||
| IL_6HTQ_125 | 1/a/524:531, 1/a/536:545 | No text annotation | ||
| IL_6HTQ_237 | 1/a/589:593, 1/a/766:770 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_6HTQ_128 | 1/a/606:607, 1/a/649:652 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_6HTQ_129 | 1/a/613:614, 1/a/641:643 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6HTQ_206 | 1/a/613:621, 1/a/637:643 | No text annotation | ||
| IL_6HTQ_130 | 1/a/614:621, 1/a/637:641 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_6HTQ_131 | 1/a/663:664, 1/a/760:763 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.2 | |
| IL_6HTQ_207 | 1/a/666:667, 1/a/756:758 | Major groove platform | homologous IL_4LFB_028 IL_48076.8 | |
| IL_6HTQ_133 | 1/a/671:675, 1/a/749:752 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_6HTQ_134 | 1/a/682:688, 1/a/720:726 | No text annotation | ||
| IL_6HTQ_209 | 1/a/693:697, 1/a/708:715 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_6HTQ_136 | 1/a/782:788, 1/a/812:815 | No text annotation | ||
| IL_6HTQ_137 | 1/a/788:792, 1/a/808:812 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_6HTQ_138 | 1/a/897:904, 1/a/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_6HTQ_210 | 1/a/897:907, 1/a/912:920 | No text annotation | ||
| IL_6HTQ_211 | 1/a/931:933, 1/a/1402:1405 | No text annotation | geometric IL_4M4O_004 IL_53541.1 | |
| IL_6HTQ_140 | 1/a/935:937, 1/a/1399:1400 | Single bulged G | homologous IL_4LFB_036 IL_28408.2 | |
| IL_6HTQ_141 | 1/a/943:945, 1/a/1389:1393 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_6HTQ_142 | 1/a/963:964, 1/a/1235:1237 | Minor groove platform | homologous IL_4LFB_038 IL_34520.3 | |
| IL_6HTQ_145 | 1/a/1058:1060, 1/a/1217:1218 | Single bulged U | homologous IL_4LFB_042 IL_97561.5 | |
| IL_6HTQ_238 | 1/a/1062:1066, 1/a/1213:1215 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_6HTQ_147 | 1/a/1067:1068, 1/a/1208:1212 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_6HTQ_148 | 1/a/1069:1071, 1/a/1204:1207 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
| IL_6HTQ_212 | 1/a/1069:1073, 1/a/1202:1207 | Partly complementary | geometric IL_7VYX_008 IL_71154.3 | |
| IL_6HTQ_149 | 1/a/1071:1073, 1/a/1202:1204 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.4 | |
| IL_6HTQ_151 | 1/a/1139:1142, 1/a/1151:1152 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_6HTQ_153 | 1/a/1256:1262, 1/a/1293:1299 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_6HTQ_154 | 1/a/1264:1267, 1/a/1286:1291 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_6HTQ_156 | 1/a/1312:1317, 1/a/1338:1343 | No text annotation | homologous IL_4LFB_055 IL_57885.2 | |
| IL_6HTQ_157 | 1/a/1408:1410, 1/a/1511:1514 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6HTQ_158 | 1/a/1410:1413, 1/a/1507:1511 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6HTQ_159 | 1/a/1414:1416, 1/a/1504:1506 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.4 | |
| IL_6HTQ_160 | 1/a/1416:1418, 1/a/1501:1504 | No text annotation | geometric IL_8UO6_002 IL_53541.1 | |
| IL_6HTQ_161 | 1/a/1421:1423, 1/a/1497:1498 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6HTQ_216 | 1/a/1421:1428, 1/a/1491:1498 | No text annotation | ||
| IL_6HTQ_162 | 1/a/1423:1424, 1/a/1495:1497 | Single stack bend | geometric IL_7KGA_003 IL_15011.3 | |
| IL_6HTQ_163 | 1/a/1425:1428, 1/a/1491:1494 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6HTQ_164 | 1/a/1431:1436, 1/a/1483:1488 | No text annotation | geometric IL_4LFB_030 NA | |
| IL_6HTQ_165 | 1/a/1439:1444, 1/a/1476:1480 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_6HTQ_166 | 1/a/1444:1446, 1/a/1474:1476 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HTQ_169 | Isolated non-canonical cWW contact | ||
| IL_6HTQ_005 | Single bulged A | ||
| IL_6HTQ_007 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6HTQ_009 | Major groove minor groove platform; mini C-loop | ||
| IL_6HTQ_010 | No text annotation | ||
| IL_6HTQ_013 | No text annotation | ||
| IL_6HTQ_172 | Double sheared with non-canonical cWW | ||
| IL_6HTQ_173 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_016 | No text annotation | ||
| IL_6HTQ_174 | No text annotation | ||
| IL_6HTQ_021 | No text annotation | ||
| IL_6HTQ_176 | No text annotation | ||
| IL_6HTQ_222 | Single stack bend | ||
| IL_6HTQ_024 | No text annotation | ||
| IL_6HTQ_177 | No text annotation | ||
| IL_6HTQ_026 | Isolated non-canonical cWW pair | ||
| IL_6HTQ_178 | Isolated cWS basepair | ||
| IL_6HTQ_028 | Double sheared with non-canonical cWW | ||
| IL_6HTQ_029 | No text annotation | ||
| IL_6HTQ_031 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_037 | Kink-turn | ||
| IL_6HTQ_038 | No text annotation | ||
| IL_6HTQ_041 | Kink-turn | ||
| IL_6HTQ_042 | No text annotation | ||
| IL_6HTQ_183 | No text annotation | ||
| IL_6HTQ_046 | Minor groove platform related | ||
| IL_6HTQ_047 | No text annotation | ||
| IL_6HTQ_048 | Other IL | ||
| IL_6HTQ_050 | No text annotation | ||
| IL_6HTQ_052 | No text annotation | ||
| IL_6HTQ_053 | Double sheared | ||
| IL_6HTQ_054 | No text annotation | ||
| IL_6HTQ_185 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_056 | UAA/GAN variation | ||
| IL_6HTQ_186 | No text annotation | ||
| IL_6HTQ_188 | No text annotation | ||
| IL_6HTQ_064 | Isolated non-canonical cWW with bulges | ||
| IL_6HTQ_189 | Partly complementary | ||
| IL_6HTQ_190 | No text annotation | ||
| IL_6HTQ_069 | No text annotation | ||
| IL_6HTQ_191 | No text annotation | ||
| IL_6HTQ_072 | No text annotation | ||
| IL_6HTQ_192 | No text annotation | ||
| IL_6HTQ_074 | Isolated non-canonical cWW pair | ||
| IL_6HTQ_193 | Other IL | ||
| IL_6HTQ_194 | No text annotation | ||
| IL_6HTQ_075 | Kink-turn | ||
| IL_6HTQ_077 | Double sheared with non-canonical cWW | ||
| IL_6HTQ_078 | Isolated non-canonical cWW with bulges | ||
| IL_6HTQ_086 | No text annotation | ||
| IL_6HTQ_196 | Partly complementary | ||
| IL_6HTQ_094 | Single bulged C | ||
| IL_6HTQ_197 | No text annotation | ||
| IL_6HTQ_096 | No text annotation | ||
| IL_6HTQ_098 | No text annotation | ||
| IL_6HTQ_233 | No text annotation | ||
| IL_6HTQ_198 | No text annotation | ||
| IL_6HTQ_099 | Major groove minor groove platform; mini C-loop | ||
| IL_6HTQ_100 | Symmetric double minor groove platform | ||
| IL_6HTQ_104 | Other IL | ||
| IL_6HTQ_200 | No text annotation | ||
| IL_6HTQ_108 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_201 | Isolated non-canonical cWW pair | ||
| IL_6HTQ_109 | No text annotation | ||
| IL_6HTQ_202 | No text annotation | ||
| IL_6HTQ_110 | No text annotation | ||
| IL_6HTQ_111 | Isolated non-canonical cWW pair | ||
| IL_6HTQ_235 | Multiple bulged bases | ||
| IL_6HTQ_113 | tWH-tWH-tHW-tHW | ||
| IL_6HTQ_203 | No text annotation | ||
| IL_6HTQ_115 | No text annotation | ||
| IL_6HTQ_120 | No text annotation | ||
| IL_6HTQ_121 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6HTQ_122 | No text annotation | ||
| IL_6HTQ_123 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_126 | No text annotation | ||
| IL_6HTQ_127 | Major groove platform | ||
| IL_6HTQ_205 | No text annotation | ||
| IL_6HTQ_132 | Isolated non-canonical cWW with bulges | ||
| IL_6HTQ_208 | Partly complementary | ||
| IL_6HTQ_135 | Kink-turn | ||
| IL_6HTQ_139 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_143 | Minor groove platform | ||
| IL_6HTQ_144 | Single stack bend | ||
| IL_6HTQ_146 | Tandem non-canonical cWW pairs | ||
| IL_6HTQ_213 | Minor groove platform | ||
| IL_6HTQ_150 | No text annotation | ||
| IL_6HTQ_214 | No text annotation | ||
| IL_6HTQ_152 | No text annotation | ||
| IL_6HTQ_215 | No text annotation | ||
| IL_6HTQ_155 | Double sheared with non-canonical cWW | ||
| IL_6HTQ_217 | Triple non-canonical cWW pairs | ||
| IL_6HTQ_167 | Isolated tHS basepair with bulges | ||
| IL_6HTQ_168 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HTQ_001 | 1/A/30:31, 1/A/521:528, 1/A/555:556 | No text annotation | homologous J3_7A0S_001 J3_68715.1 | |
| J3_6HTQ_024 | 1/A/30:31, 1/A/521:531, 1/A/542:556 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_6HTQ_025 | 1/A/32:35, 1/A/492:508, 1/A/515:520 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_6HTQ_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_6HTQ_003 | 1/A/729:736, 1/A/820:824, 1/A/834:842 | No text annotation | ||
| J3_6HTQ_040 | 1/A/744:747, 1/A/779:783, 1/A/807:812 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_6HTQ_006 | 1/A/1337:1342, 1/A/1670:1672, 1/A/1684:1687 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6HTQ_007 | 1/A/1344:1348, 1/A/1650:1656, 1/A/1665:1668 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_6HTQ_041 | 1/A/1383:1389, 1/A/1420:1424, 1/A/1441:1442 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_6HTQ_042 | 1/A/1470:1475, 1/A/1612:1613, 1/A/1616:1622 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6HTQ_043 | 1/A/2115:2122, 1/A/2225:2230, 1/A/2251:2262 | No text annotation | ||
| J3_6HTQ_009 | 1/A/2324:2328, 1/A/2346:2352, 1/A/2361:2366 | No text annotation | ||
| J3_6HTQ_032 | 1/A/2546:2549, 1/A/2574:2576, 1/A/2590:2596 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_6HTQ_011 | 1/A/2838:2840, 1/A/2856:2862, 1/A/2906:2912 | No text annotation | ||
| J3_6HTQ_012 | 1/B/9:14, 1/B/66:68, 1/B/104:107 | No text annotation | ||
| J3_6HTQ_013 | 1/a/48:49, 1/a/369:375, 1/a/401:403 | No text annotation | homologous J3_6CZR_015 NA | |
| J3_6HTQ_033 | 1/a/48:49, 1/a/369:377, 1/a/400:403 | No text annotation | ||
| J3_6HTQ_034 | 1/a/48:54, 1/a/367:377, 1/a/400:403 | No text annotation | ||
| J3_6HTQ_014 | 1/a/594:597, 1/a/660:663, 1/a/763:765 | No text annotation | ||
| J3_6HTQ_036 | 1/a/594:597, 1/a/660:664, 1/a/760:765 | No text annotation | ||
| J3_6HTQ_015 | 1/a/681:682, 1/a/726:734, 1/a/741:743 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6HTQ_044 | 1/a/681:686, 1/a/722:734, 1/a/741:743 | No text annotation | ||
| J3_6HTQ_016 | 1/a/835:838, 1/a/867:871, 1/a/878:884 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6HTQ_017 | 1/a/946:949, 1/a/1353:1359, 1/a/1381:1388 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6HTQ_045 | 1/a/965:972, 1/a/983:994, 1/a/1230:1234 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6HTQ_019 | 1/a/1000:1003, 1/a/1055:1057, 1/a/1219:1224 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6HTQ_038 | 1/a/1000:1007, 1/a/1054:1057, 1/a/1219:1224 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_6HTQ_021 | 1/a/1073:1078, 1/a/1117:1123, 1/a/1196:1202 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_6HTQ_046 | 1/a/1083:1084, 1/a/1093:1096, 1/a/1109:1112 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_6HTQ_023 | 1/a/1126:1128, 1/a/1164:1167, 1/a/1190:1193 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6HTQ_047 | 1/a/1126:1128, 1/a/1164:1170, 1/a/1184:1193 | No text annotation | homologous J3_5J7L_054 NA | |
| J4_6HTQ_001 | 1/A/271:276, 1/A/295:300, 1/A/451:453, 1/A/468:471 | No text annotation | ||
| J4_6HTQ_002 | 1/A/271:276, 1/A/295:302, 1/A/416:453, 1/A/468:471 | No text annotation | ||
| J4_6HTQ_003 | 1/A/340:344, 1/A/360:363, 1/A/367:369, 1/A/381:385 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
| J4_6HTQ_018 | 1/A/645:648, 1/A/670:674, 1/A/681:684, 1/A/696:703 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6HTQ_019 | 1/A/1310:1316, 1/A/1332:1334, 1/A/1690:1693, 1/A/2038:2039 | No text annotation | ||
| J4_6HTQ_006 | 1/A/1349:1354, 1/A/1376:1382, 1/A/1443:1444, 1/A/1642:1649 | No text annotation | homologous J4_7A0S_005 J4_77353.1 | |
| J4_6HTQ_020 | 1/A/1352:1354, 1/A/1376:1382, 1/A/1443:1444, 1/A/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_6HTQ_021 | 1/A/1797:1805, 1/A/1817:1821, 1/A/1856:1859, 1/A/2004:2013 | No text annotation | ||
| J4_6HTQ_022 | 1/A/1862:1864, 1/A/1934:1935, 1/A/1953:1974, 1/A/1990:2001 | No text annotation | ||
| J4_6HTQ_023 | 1/A/2314:2318, 1/A/2372:2376, 1/A/2399:2401, 1/A/2410:2412 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_6HTQ_024 | 1/A/2672:2675, 1/A/2703:2707, 1/A/2758:2764, 1/A/2798:2800 | No text annotation | ||
| J4_6HTQ_012 | 1/a/113:121, 1/a/246:249, 1/a/293:297, 1/a/319:320 | No text annotation | ||
| J4_6HTQ_013 | 1/a/141:143, 1/a/177:183, 1/a/206:212, 1/a/227:229 | No text annotation | ||
| J4_6HTQ_025 | 1/a/578:586, 1/a/773:778, 1/a/819:831, 1/a/888:891 | No text annotation | ||
| J4_6HTQ_015 | 1/a/951:956, 1/a/1244:1250, 1/a/1305:1312, 1/a/1343:1351 | No text annotation | ||
| J5_6HTQ_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.1 | |
| J5_6HTQ_010 | 1/A/577:579, 1/A/604:608, 1/A/621:623, 1/A/1301:1302, 1/A/2046:2047 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_6HTQ_011 | 1/A/628:633, 1/A/715:718, 1/A/856:859, 1/A/1236:1237, 1/A/1290:1296 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6HTQ_004 | 1/A/1349:1354, 1/A/1376:1389, 1/A/1420:1424, 1/A/1441:1444, 1/A/1642:1649 | No text annotation | ||
| J5_6HTQ_005 | 1/A/1719:1727, 1/A/1751:1752, 1/A/1780:1781, 1/A/1785:1795, 1/A/2015:2019 | No text annotation | ||
| J5_6HTQ_012 | 1/A/2086:2095, 1/A/2473:2482, 1/A/2529:2542, 1/A/2600:2617, 1/A/2635:2640 | No text annotation | ||
| J5_6HTQ_007 | 1/a/38:41, 1/a/411:414, 1/a/444:449, 1/a/502:509, 1/a/554:557 | No text annotation | ||
| J5_6HTQ_013 | 1/a/60:63, 1/a/104:111, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_6HTQ_014 | 1/v/7:10, 1/v/26:28, 1/v/44:46, 1/v/57:60, 1/v/76:77 | No text annotation | homologous J5_3ZGZ_001 J5_97113.1 | |
| J6_6HTQ_003 | 1/A/45:46, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/473:480 | No text annotation | ||
| J6_6HTQ_004 | 1/A/2103:2109, 1/A/2269:2275, 1/A/2287:2288, 1/A/2310:2313, 1/A/2413:2424, 1/A/2450:2464 | No text annotation | ||
| J7_6HTQ_002 | 1/A/863:869, 1/A/882:883, 1/A/989:992, 1/A/1017:1022, 1/A/1033:1037, 1/A/1209:1210, 1/A/1226:1232 | No text annotation | ||
| J9_6HTQ_001 | 1/A/8:15, 1/A/571:577, 1/A/2047:2052, 1/A/2069:2074, 1/A/2652:2659, 1/A/2817:2820, 1/A/2831:2840, 1/A/2856:2861, 1/A/2907:2919 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HTQ_026 | No text annotation | ||
| J3_6HTQ_004 | No text annotation | ||
| J3_6HTQ_005 | No text annotation | ||
| J3_6HTQ_027 | No text annotation | ||
| J3_6HTQ_028 | No text annotation | ||
| J3_6HTQ_008 | No text annotation | ||
| J3_6HTQ_029 | No text annotation | ||
| J3_6HTQ_030 | No text annotation | ||
| J3_6HTQ_031 | No text annotation | ||
| J3_6HTQ_010 | No text annotation | ||
| J3_6HTQ_035 | No text annotation | ||
| J3_6HTQ_037 | No text annotation | ||
| J3_6HTQ_018 | No text annotation | ||
| J3_6HTQ_020 | No text annotation | ||
| J3_6HTQ_022 | No text annotation | ||
| J3_6HTQ_039 | No text annotation | ||
| J4_6HTQ_004 | No text annotation | ||
| J4_6HTQ_005 | No text annotation | ||
| J4_6HTQ_007 | No text annotation | ||
| J4_6HTQ_008 | No text annotation | ||
| J4_6HTQ_009 | No text annotation | ||
| J4_6HTQ_010 | No text annotation | ||
| J4_6HTQ_011 | No text annotation | ||
| J4_6HTQ_014 | No text annotation | ||
| J4_6HTQ_026 | tRNA junction | ||
| J4_6HTQ_016 | No text annotation | ||
| J4_6HTQ_017 | No text annotation | ||
| J4_6HTQ_027 | No text annotation | ||
| J5_6HTQ_002 | No text annotation | ||
| J5_6HTQ_003 | No text annotation | ||
| J5_6HTQ_006 | No text annotation | ||
| J5_6HTQ_008 | No text annotation | ||
| J5_6HTQ_009 | No text annotation | ||
| J6_6HTQ_001 | No text annotation | ||
| J6_6HTQ_002 | No text annotation | ||
| J7_6HTQ_001 | No text annotation |
Coloring options: