HL_6HTQ_033

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAGGCCGAAAGGCGUAG

Length

18 nucleotides

Bulged bases

6HTQ|1|A|C|1402, 6HTQ|1|A|G|1408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_033 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3575

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6HTQ|1|A|C|1396
6HTQ|1|A|G|1397
6HTQ|1|A|A|1398
6HTQ|1|A|G|1399
6HTQ|1|A|G|1400
6HTQ|1|A|C|1401
6HTQ|1|A|C|1402
6HTQ|1|A|G|1403
6HTQ|1|A|A|1404
6HTQ|1|A|A|1405
6HTQ|1|A|A|1406
6HTQ|1|A|G|1407
6HTQ|1|A|G|1408
6HTQ|1|A|C|1409
6HTQ|1|A|G|1410
6HTQ|1|A|U|1411
6HTQ|1|A|A|1412
6HTQ|1|A|G|1413

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain W

50S ribosomal protein L28