HL_6HTQ_035

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUAUUGGAUAUCC

Length

14 nucleotides

Bulged bases

6HTQ|1|A|U|1500, 6HTQ|1|A|U|1501, 6HTQ|1|A|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2353

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6HTQ|1|A|G|1496
6HTQ|1|A|G|1497
6HTQ|1|A|U|1498
6HTQ|1|A|A|1499
6HTQ|1|A|U|1500
6HTQ|1|A|U|1501
6HTQ|1|A|G|1502
6HTQ|1|A|G|1503
6HTQ|1|A|A|1504
6HTQ|1|A|U|1505
6HTQ|1|A|A|1506
6HTQ|1|A|U|1507
6HTQ|1|A|C|1508
6HTQ|1|A|C|1509

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17