HL_6HTQ_052

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6HTQ|1|A|G|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2206

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6HTQ|1|A|C|2277
6HTQ|1|A|U|2278
6HTQ|1|A|G|2279
6HTQ|1|A|G|2280
6HTQ|1|A|G|2281
6HTQ|1|A|G|2282
6HTQ|1|A|C|2283
6HTQ|1|A|G|2284
6HTQ|1|A|G|2285

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L27

Chain v

Transfer RNA; tRNA