HL_6HTQ_128

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

6HTQ|1|u|U|17, 6HTQ|1|u|G|18, 6HTQ|1|u|G|19, 6HTQ|1|u|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_128 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.2027

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6HTQ|1|u|C|13
6HTQ|1|u|A|14
6HTQ|1|u|G|15
6HTQ|1|u|U|16
6HTQ|1|u|U|17
6HTQ|1|u|G|18
6HTQ|1|u|G|19
6HTQ|1|u|U|20
6HTQ|1|u|A|21
6HTQ|1|u|G|22

Current chains

Chain u

A/R-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain x

GTP pyrophosphokinase