HL_6HTQ_134

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6HTQ|1|A|A|2059, 6HTQ|1|A|A|2060, 6HTQ|1|A|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_134 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.2618

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6HTQ|1|A|G|2056
6HTQ|1|A|U|2057
6HTQ|1|A|G|2058
6HTQ|1|A|A|2059
6HTQ|1|A|A|2060
6HTQ|1|A|G|2061
6HTQ|1|A|A|2062
6HTQ|1|A|U|2063
6HTQ|1|A|G|2064
6HTQ|1|A|C|2065

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L32

Chain D

50S ribosomal protein L3