HL_6HTQ_135

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUUUCC

Length

7 nucleotides

Bulged bases

6HTQ|1|B|U|85, 6HTQ|1|B|U|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_135 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3172

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HTQ|1|B|G|83
6HTQ|1|B|G|84
6HTQ|1|B|U|85
6HTQ|1|B|U|86
6HTQ|1|B|U|87
6HTQ|1|B|C|88
6HTQ|1|B|C|89

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L16

Chain Y

50S ribosomal protein L30