HL_6I0Y_038

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

6I0Y|1|A|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I0Y_038 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.305

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6I0Y|1|A|A|1532
6I0Y|1|A|C|1533
6I0Y|1|A|U|1534
6I0Y|1|A|A|1535
6I0Y|1|A|C|1536
6I0Y|1|A|G|1537
6I0Y|1|A|G|1538
6I0Y|1|A|U|1539

Current chains

Chain A

23S ribosomal RNA

Nearby chains