HL_6I0Y_048

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6I0Y|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I0Y_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.129

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6I0Y|1|A|G|1910
6I0Y|1|A|U|1911
6I0Y|1|A|A|1912
6I0Y|1|A|A|1913
6I0Y|1|A|C|1914
6I0Y|1|A|U|1915
6I0Y|1|A|A|1916
6I0Y|1|A|U|1917
6I0Y|1|A|A|1918
6I0Y|1|A|A|1919
6I0Y|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Transfer RNA; tRNA