HL_6I0Y_055

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I0Y_055 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1288

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6I0Y|1|A|G|2303
6I0Y|1|A|G|2304
6I0Y|1|A|U|2305
6I0Y|1|A|C|2306
6I0Y|1|A|G|2307
6I0Y|1|A|G|2308
6I0Y|1|A|A|2309
6I0Y|1|A|C|2310
6I0Y|1|A|A|2311
6I0Y|1|A|U|2312
6I0Y|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5