HL_6I0Y_066

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6I0Y|1|A|G|2751, 6I0Y|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I0Y_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0822

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6I0Y|1|A|C|2745
6I0Y|1|A|U|2746
6I0Y|1|A|G|2747
6I0Y|1|A|A|2748
6I0Y|1|A|A|2749
6I0Y|1|A|A|2750
6I0Y|1|A|G|2751
6I0Y|1|A|C|2752
6I0Y|1|A|A|2753
6I0Y|1|A|U|2754
6I0Y|1|A|C|2755
6I0Y|1|A|U|2756
6I0Y|1|A|A|2757
6I0Y|1|A|A|2758
6I0Y|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13