HL_6I0Y_073

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGGGGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I0Y_073 not in the Motif Atlas

Geometric match to HL_4V9Q_214

Geometric discrepancy: 0.1771

The information below is about HL_4V9Q_214

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6I0Y|1|V|C|31
6I0Y|1|V|A|32
6I0Y|1|V|U|33
6I0Y|1|V|G|34
6I0Y|1|V|G|35
6I0Y|1|V|G|36
6I0Y|1|V|G|37
6I0Y|1|V|U|38
6I0Y|1|V|G|39

Current chains

Chain V

Proline tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA