HL_6I7O_038

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6I7O|1|2b|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_038 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3674

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6I7O|1|2b|C|70
6I7O|1|2b|A|71
6I7O|1|2b|A|72
6I7O|1|2b|U|73
6I7O|1|2b|U|74
6I7O|1|2b|U|75
6I7O|1|2b|A|76
6I7O|1|2b|U|77
6I7O|1|2b|A|78
6I7O|1|2b|C|79
6I7O|1|2b|A|80
6I7O|1|2b|G|81

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Tb

40S ribosomal protein S6-A

Chain XE

60S ribosomal protein L24-A