RNA 3D Hub //

6I7O Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6I7O_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6I7O_0101/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6I7O_0221/2/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_6I7O_0251/2/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_6I7O_1131/BQ/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_6I7O_1151/BQ/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_6I7O_1191/BQ/2135:2145No text annotation
homologous
HL_5TBW_046
NA
HL_6I7O_1231/BQ/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_6I7O_1371/BQ/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_6I7O_1381/BQ/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_6I7O_1521/YQ/38:45No text annotation
homologous
HL_5TBW_001
NA
HL_6I7O_1601/YQ/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6I7O_1721/YQ/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_6I7O_1731/YQ/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_6I7O_1921/YQ/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_6I7O_1941/YQ/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_6I7O_1971/YQ/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_6I7O_2021/YQ/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_6I7O_2161/YQ/2963:2968GNRA
homologous
HL_5TBW_064
NA

Problematic loops

#loop idProblemSequence
HL_6I7O_002No text annotation
HL_6I7O_003GNRA related
HL_6I7O_004No text annotation
HL_6I7O_005UNCG
HL_6I7O_006T-loop with 1 bulged base
HL_6I7O_007Mini UNCG
HL_6I7O_008GNRA related
HL_6I7O_009No text annotation
HL_6I7O_011UNCG
HL_6I7O_012No text annotation
HL_6I7O_013No text annotation
HL_6I7O_014No text annotation
HL_6I7O_015GNRA variation
HL_6I7O_016No text annotation
HL_6I7O_017No text annotation
HL_6I7O_241No text annotation
HL_6I7O_018No text annotation
HL_6I7O_019Pseudoknot geometry
HL_6I7O_248No text annotation
HL_6I7O_020No text annotation
HL_6I7O_021GNRA
HL_6I7O_023No text annotation
HL_6I7O_024GNRA
HL_6I7O_026No text annotation
HL_6I7O_027Anticodon loop related
HL_6I7O_028GNRA
HL_6I7O_029No text annotation
HL_6I7O_030No text annotation
HL_6I7O_031GNRA
HL_6I7O_032GNRA
HL_6I7O_033No text annotation
HL_6I7O_034No text annotation
HL_6I7O_035No text annotation
HL_6I7O_036GNRA variation
HL_6I7O_037No text annotation
HL_6I7O_038No text annotation
HL_6I7O_039GNRA related
HL_6I7O_040No text annotation
HL_6I7O_041UNCG
HL_6I7O_042T-loop with 1 bulged base
HL_6I7O_043Mini UNCG
HL_6I7O_044GNRA related
HL_6I7O_045No text annotation
HL_6I7O_046No text annotation
HL_6I7O_047UNCG
HL_6I7O_048No text annotation
HL_6I7O_049No text annotation
HL_6I7O_050No text annotation
HL_6I7O_051GNRA variation
HL_6I7O_052No text annotation
HL_6I7O_053No text annotation
HL_6I7O_054No text annotation
HL_6I7O_055No text annotation
HL_6I7O_056No text annotation
HL_6I7O_249No text annotation
HL_6I7O_057No text annotation
HL_6I7O_058GNRA
HL_6I7O_059No text annotation
HL_6I7O_242No text annotation
HL_6I7O_060No text annotation
HL_6I7O_061GNRA
HL_6I7O_062GNRA
HL_6I7O_063No text annotation
HL_6I7O_064Anticodon loop related
HL_6I7O_065GNRA
HL_6I7O_066No text annotation
HL_6I7O_067No text annotation
HL_6I7O_068GNRA
HL_6I7O_069GNRA
HL_6I7O_070No text annotation
HL_6I7O_071No text annotation
HL_6I7O_072No text annotation
HL_6I7O_073GNRA variation
HL_6I7O_074No text annotation
HL_6I7O_075No text annotation
HL_6I7O_076No text annotation
HL_6I7O_077No text annotation
HL_6I7O_078T-loop with 2 stacked bulged bases
HL_6I7O_079No text annotation
HL_6I7O_080T-loop with unstacked turn
HL_6I7O_081No text annotation
HL_6I7O_082Pseudoknot geometry
HL_6I7O_083GNRA
HL_6I7O_084GNRA
HL_6I7O_085No text annotation
HL_6I7O_243No text annotation
HL_6I7O_086GNRA
HL_6I7O_087T-loop with 2 stacked bulged bases
HL_6I7O_088No text annotation
HL_6I7O_089GNRA
HL_6I7O_090GNRA
HL_6I7O_091No text annotation
HL_6I7O_092GNRA
HL_6I7O_093No text annotation
HL_6I7O_094No text annotation
HL_6I7O_095No text annotation
HL_6I7O_096No text annotation
HL_6I7O_244No text annotation
HL_6I7O_097No text annotation
HL_6I7O_098GNRA
HL_6I7O_099No text annotation
HL_6I7O_100No text annotation
HL_6I7O_101GNRA wlth tandem sheared
HL_6I7O_102No text annotation
HL_6I7O_103GNRA
HL_6I7O_104T-loop with 2 stacked bulged bases
HL_6I7O_105Pseudoknot geometry with 3' bulge
HL_6I7O_106GNRA variation
HL_6I7O_107No text annotation
HL_6I7O_108No text annotation
HL_6I7O_109GNRA
HL_6I7O_110No text annotation
HL_6I7O_111No text annotation
HL_6I7O_112No text annotation
HL_6I7O_114No text annotation
HL_6I7O_116UNCG
HL_6I7O_117No text annotation
HL_6I7O_118No text annotation
HL_6I7O_120GNRA
HL_6I7O_121GNRA
HL_6I7O_122No text annotation
HL_6I7O_124No text annotation
HL_6I7O_125No text annotation
HL_6I7O_126Mini UNCG
HL_6I7O_127No text annotation
HL_6I7O_128No text annotation
HL_6I7O_129No text annotation
HL_6I7O_130No text annotation
HL_6I7O_131Pseudoknot geometry
HL_6I7O_132No text annotation
HL_6I7O_133GNRA
HL_6I7O_134Pseudoknot geometry
HL_6I7O_135No text annotation
HL_6I7O_136No text annotation
HL_6I7O_139GNRA
HL_6I7O_140Ribsomal LSU H95
HL_6I7O_141No text annotation
HL_6I7O_142No text annotation
HL_6I7O_143No text annotation
HL_6I7O_144No text annotation
HL_6I7O_145Mini UNCG
HL_6I7O_245No text annotation
HL_6I7O_146No text annotation
HL_6I7O_147GNRA
HL_6I7O_148Pseudoknot with intercalation
HL_6I7O_149No text annotation
HL_6I7O_150No text annotation
HL_6I7O_151No text annotation
HL_6I7O_153No text annotation
HL_6I7O_154No text annotation
HL_6I7O_155No text annotation
HL_6I7O_156T-loop with 2 stacked bulged bases
HL_6I7O_157No text annotation
HL_6I7O_158T-loop with unstacked turn
HL_6I7O_159No text annotation
HL_6I7O_161GNRA
HL_6I7O_162GNRA
HL_6I7O_163No text annotation
HL_6I7O_164GNRA
HL_6I7O_165T-loop with 2 stacked bulged bases
HL_6I7O_166No text annotation
HL_6I7O_167GNRA
HL_6I7O_168GNRA
HL_6I7O_169No text annotation
HL_6I7O_170GNRA
HL_6I7O_171No text annotation
HL_6I7O_174No text annotation
HL_6I7O_175No text annotation
HL_6I7O_176GNRA
HL_6I7O_177No text annotation
HL_6I7O_178No text annotation
HL_6I7O_179GNRA wlth tandem sheared
HL_6I7O_180Externally structured
HL_6I7O_181GNRA
HL_6I7O_182T-loop with 2 stacked bulged bases
HL_6I7O_183Pseudoknot geometry with 3' bulge
HL_6I7O_184GNRA variation
HL_6I7O_185tRNA D-loop
HL_6I7O_186No text annotation
HL_6I7O_187GNRA
HL_6I7O_188No text annotation
HL_6I7O_189No text annotation
HL_6I7O_190No text annotation
HL_6I7O_191No text annotation
HL_6I7O_193GNRA
HL_6I7O_195No text annotation
HL_6I7O_196No text annotation
HL_6I7O_198GNRA
HL_6I7O_199GNRA
HL_6I7O_200No text annotation
HL_6I7O_201No text annotation
HL_6I7O_203No text annotation
HL_6I7O_204Mini UNCG
HL_6I7O_205Externally structured
HL_6I7O_206No text annotation
HL_6I7O_207No text annotation
HL_6I7O_208No text annotation
HL_6I7O_209Pseudoknot geometry
HL_6I7O_210No text annotation
HL_6I7O_211GNRA
HL_6I7O_212Pseudoknot geometry
HL_6I7O_213No text annotation
HL_6I7O_214No text annotation
HL_6I7O_215No text annotation
HL_6I7O_217GNRA
HL_6I7O_218Ribsomal LSU H95
HL_6I7O_219No text annotation
HL_6I7O_220No text annotation
HL_6I7O_221No text annotation
HL_6I7O_222No text annotation
HL_6I7O_223Mini UNCG
HL_6I7O_246No text annotation
HL_6I7O_224No text annotation
HL_6I7O_225GNRA
HL_6I7O_247No text annotation
HL_6I7O_226No text annotation
HL_6I7O_227No text annotation
HL_6I7O_228No text annotation
HL_6I7O_229No text annotation
HL_6I7O_230tRNA anticodon loop
HL_6I7O_231T-loop with 2 stacked bulged bases
HL_6I7O_232tRNA D-loop
HL_6I7O_233tRNA anticodon loop
HL_6I7O_234T-loop with 2 stacked bulged bases
HL_6I7O_235No text annotation
HL_6I7O_236tRNA anticodon loop
HL_6I7O_237T-loop with 2 stacked bulged bases
HL_6I7O_238No text annotation
HL_6I7O_239No text annotation
HL_6I7O_240T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6I7O_0501/2/1034:1036,
1/2/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_6I7O_0541/2/1146:1147,
1/2/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_6I7O_0651/2/1280:1281,
1/2/1426:1428		Single bulged A
homologous
IL_4V88_452
NA
IL_6I7O_0661/2/1290:1292,
1/2/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6I7O_0781/2/1642:1644,
1/2/1757:1759		Isolated non-canonical cWW pair
geometric
IL_4ZC7_004
IL_01003.2
IL_6I7O_0801/2/1650:1652,
1/2/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6I7O_0811/2/1653:1656,
1/2/1744:1747		Double sheared
geometric
IL_4V88_468
NA
IL_6I7O_0821/2/1656:1658,
1/2/1743:1744		Single bulged U
homologous
IL_4V88_469
NA
IL_6I7O_1371/2b/990:994,
1/2b/1010:1014		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_05821.1
IL_6I7O_1441/2b/1157:1160,
1/2b/1617:1621		C-loop
geometric
IL_1KOG_007
IL_63596.12
IL_6I7O_1641/2b/1636:1638,
1/2b/1764:1767		No text annotation
geometric
IL_5J7L_058
NA
IL_6I7O_2021/BQ/803:805,
1/BQ/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6I7O_2071/BQ/869:872,
1/BQ/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6I7O_2501/BQ/1883:1889,
1/BQ/2346:2349		No text annotation
homologous
IL_5TBW_074
NA
IL_6I7O_2511/BQ/1895:1897,
1/BQ/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_6I7O_2521/BQ/1898:1901,
1/BQ/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_6I7O_4811/BQ/1898:1906,
1/BQ/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_6I7O_2531/BQ/1901:1906,
1/BQ/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_6I7O_2571/BQ/2128:2129,
1/BQ/2323:2325		Single bulged A
homologous
IL_5TBW_082
NA
IL_6I7O_2581/BQ/2156:2161,
1/BQ/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6I7O_2651/BQ/2277:2288,
1/BQ/2304:2307		No text annotation
geometric
IL_5TBW_090
NA
IL_6I7O_2671/BQ/2396:2398,
1/BQ/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_6I7O_2711/BQ/2519:2526,
1/BQ/2584:2588		No text annotation
IL_6I7O_2921/BQ/3047:3051,
1/BQ/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_6I7O_3251/YQ/31:38,
1/YQ/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_6I7O_3471/YQ/803:805,
1/YQ/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6I7O_3481/YQ/805:809,
1/YQ/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6I7O_3541/YQ/907:909,
1/YQ/919:923		No text annotation
homologous
IL_8C3A_036
NA
IL_6I7O_3781/YQ/1376:1378,
1/YQ/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_6I7O_4061/YQ/2200:2201,
1/YQ/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6I7O_4091/YQ/2276:2277,
1/YQ/2307:2310		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_6I7O_4101/YQ/2277:2288,
1/YQ/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_6I7O_4121/YQ/2396:2398,
1/YQ/2981:2984		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_6I7O_4131/YQ/2409:2411,
1/YQ/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_6I7O_4141/YQ/2412:2413,
1/YQ/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6I7O_4151/YQ/2423:2425,
1/YQ/2604:2607		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_6I7O_4221/YQ/2823:2824,
1/YQ/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_6I7O_4931/YQ/2823:2826,
1/YQ/2863:2867		No text annotation
homologous
IL_8C3A_111
NA

Problematic loops

#loop idProblemSequence
IL_6I7O_001Single bulged C
IL_6I7O_002Isolated non-canonical cWW pair
IL_6I7O_003Triple sheared related
IL_6I7O_004No text annotation
IL_6I7O_005Minor groove platform
IL_6I7O_006No text annotation
IL_6I7O_007No text annotation
IL_6I7O_008Tandem non-canonical cWW pairs
IL_6I7O_009Multiple bulged bases
IL_6I7O_010No text annotation
IL_6I7O_011tWH-tWH-tHW-tHW
IL_6I7O_012Isolated cWH basepair
IL_6I7O_013Double sheared
IL_6I7O_014Major groove platform with extra cWW
IL_6I7O_015Isolated non-canonical cWW pair
IL_6I7O_016Single bulged A
IL_6I7O_017No text annotation
IL_6I7O_018Single bulged U
IL_6I7O_019Kink-turn with non-sequential stacking
IL_6I7O_020No text annotation
IL_6I7O_021No text annotation
IL_6I7O_022Isolated cWH basepair
IL_6I7O_023Isolated near basepair
IL_6I7O_024Single bulged U
IL_6I7O_025C-loop
IL_6I7O_026Single bulged G
IL_6I7O_027No text annotation
IL_6I7O_028Minor groove platform
IL_6I7O_029Minor groove platform
IL_6I7O_030SSU/LSU pseudoknot
IL_6I7O_031Single bulged U
IL_6I7O_032Kink-turn related
IL_6I7O_033No text annotation
IL_6I7O_034Isolated non-canonical cWW pair
IL_6I7O_035tSH-tHW-tHS
IL_6I7O_036Isolated non-canonical cWW pair
IL_6I7O_037No text annotation
IL_6I7O_038Major groove minor groove platform with extra cWW
IL_6I7O_496No text annotation
IL_6I7O_039Isolated non-canonical cWW pair
IL_6I7O_040No text annotation
IL_6I7O_041No text annotation
IL_6I7O_042Major groove platform; stack outside cWW
IL_6I7O_043Tandem non-canonical cWW pairs
IL_6I7O_467Isolated cWH basepair
IL_6I7O_044Tandem non-canonical cWW pairs
IL_6I7O_045Tandem non-canonical cWW pairs
IL_6I7O_046Tandem non-canonical cWW pairs
IL_6I7O_047Kink-turn related
IL_6I7O_048Other IL
IL_6I7O_049tSH-tHW-tHS
IL_6I7O_051Tandem non-canonical cWW pairs
IL_6I7O_052Single bulged U
IL_6I7O_0538x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6I7O_055Single bulged G
IL_6I7O_056C-loop
IL_6I7O_057Isolated non-canonical cWW pair
IL_6I7O_058Minor groove platform
IL_6I7O_059Isolated non-canonical cWW pair
IL_6I7O_060Kink-turn
IL_6I7O_061No text annotation
IL_6I7O_062Single bulged U
IL_6I7O_063Isolated cWS basepair
IL_6I7O_497No text annotation
IL_6I7O_468No text annotation
IL_6I7O_498No text annotation
IL_6I7O_064Minor groove platform related
IL_6I7O_067Minor groove platform
IL_6I7O_068Isolated non-canonical cWW pair
IL_6I7O_069Minor groove platform
IL_6I7O_070Isolated non-canonical cWW pair
IL_6I7O_071Major groove platform; stack outside cWW
IL_6I7O_072No text annotation
IL_6I7O_073180 degree turn
IL_6I7O_074Tandem non-canonical cWW pairs
IL_6I7O_075No text annotation
IL_6I7O_076No text annotation
IL_6I7O_077No text annotation
IL_6I7O_079No text annotation
IL_6I7O_083Isolated non-canonical cWW pair
IL_6I7O_084Double sheared
IL_6I7O_085Isolated non-canonical cWW pair
IL_6I7O_086Tandem non-canonical cWW pairs
IL_6I7O_087Triple sheared
IL_6I7O_088Single bulged C
IL_6I7O_089Isolated non-canonical cWW pair
IL_6I7O_090Triple sheared related
IL_6I7O_091No text annotation
IL_6I7O_092Minor groove platform
IL_6I7O_093No text annotation
IL_6I7O_094No text annotation
IL_6I7O_095Tandem non-canonical cWW pairs
IL_6I7O_096Multiple bulged bases
IL_6I7O_097No text annotation
IL_6I7O_098tWH-tWH-tHW-tHW
IL_6I7O_099Isolated cWH basepair
IL_6I7O_100Double sheared
IL_6I7O_101Major groove platform with extra cWW
IL_6I7O_102Isolated non-canonical cWW pair
IL_6I7O_103Single bulged A
IL_6I7O_104No text annotation
IL_6I7O_105Single bulged U
IL_6I7O_106Kink-turn with non-sequential stacking
IL_6I7O_107No text annotation
IL_6I7O_108No text annotation
IL_6I7O_109Isolated non-canonical cWW pair
IL_6I7O_110Isolated near basepair
IL_6I7O_111Single bulged U
IL_6I7O_112C-loop
IL_6I7O_113Single bulged G
IL_6I7O_114No text annotation
IL_6I7O_469No text annotation
IL_6I7O_115No text annotation
IL_6I7O_116Minor groove platform
IL_6I7O_117Minor groove platform
IL_6I7O_118SSU/LSU pseudoknot
IL_6I7O_119Single bulged U
IL_6I7O_120Kink-turn related
IL_6I7O_121No text annotation
IL_6I7O_122Isolated non-canonical cWW pair
IL_6I7O_123tSH-tHW-tHS
IL_6I7O_124Isolated non-canonical cWW pair
IL_6I7O_125No text annotation
IL_6I7O_470No text annotation
IL_6I7O_471No text annotation
IL_6I7O_126Major groove minor groove platform; mini C-loop
IL_6I7O_127Isolated non-canonical cWW pair
IL_6I7O_499No text annotation
IL_6I7O_128No text annotation
IL_6I7O_129Isolated non-canonical cWW pair
IL_6I7O_130Major groove platform; stack outside cWW
IL_6I7O_131Tandem non-canonical cWW pairs
IL_6I7O_472Isolated cWH basepair
IL_6I7O_132Tandem non-canonical cWW pairs
IL_6I7O_133Tandem non-canonical cWW pairs
IL_6I7O_134Tandem non-canonical cWW pairs
IL_6I7O_135Kink-turn related
IL_6I7O_136Other IL
IL_6I7O_138No text annotation
IL_6I7O_139Tandem non-canonical cWW pairs
IL_6I7O_140Single bulged U
IL_6I7O_1418x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6I7O_142Single bulged A
IL_6I7O_143Single bulged G
IL_6I7O_145Isolated non-canonical cWW pair
IL_6I7O_146Minor groove platform
IL_6I7O_147Isolated non-canonical cWW pair
IL_6I7O_148No text annotation
IL_6I7O_149No text annotation
IL_6I7O_150Single bulged U
IL_6I7O_151Isolated cWS basepair
IL_6I7O_473No text annotation
IL_6I7O_152Minor groove platform with extra cWW
IL_6I7O_153Single bulged A
IL_6I7O_154Isolated cWH basepair
IL_6I7O_155Minor groove platform
IL_6I7O_156Isolated non-canonical cWW pair
IL_6I7O_157Minor groove platform
IL_6I7O_500Isolated non-canonical cWW pair
IL_6I7O_158Tandem non-canonical cWW pairs
IL_6I7O_474Triple non-canonical cWW pairs
IL_6I7O_159Major groove platform; stack outside cWW
IL_6I7O_160No text annotation
IL_6I7O_161180 degree turn
IL_6I7O_162Tandem non-canonical cWW pairs
IL_6I7O_163No text annotation
IL_6I7O_165No text annotation
IL_6I7O_166Isolated non-canonical cWW pair
IL_6I7O_167No text annotation
IL_6I7O_168Isolated non-canonical cWW pair
IL_6I7O_169Double sheared
IL_6I7O_170Single bulged U
IL_6I7O_171Isolated non-canonical cWW pair
IL_6I7O_172Double sheared
IL_6I7O_173Isolated non-canonical cWW pair
IL_6I7O_174Tandem non-canonical cWW pairs
IL_6I7O_175Triple sheared
IL_6I7O_176No text annotation
IL_6I7O_475No text annotation
IL_6I7O_177Single bulged C
IL_6I7O_178Single bulged U
IL_6I7O_179No text annotation
IL_6I7O_180No text annotation
IL_6I7O_181No text annotation
IL_6I7O_182No text annotation
IL_6I7O_183Isolated non-canonical cWW pair
IL_6I7O_184Single stack bend
IL_6I7O_501No text annotation
IL_6I7O_185No text annotation
IL_6I7O_476No text annotation
IL_6I7O_186Major groove platform with extra pair
IL_6I7O_187Single bulged U
IL_6I7O_188Single bulged A
IL_6I7O_189No text annotation
IL_6I7O_190Triple sheared with non-canonical cWW
IL_6I7O_191Isolated non-canonical cWW pair
IL_6I7O_192Kink-turn related
IL_6I7O_193Single bulged A
IL_6I7O_194No text annotation
IL_6I7O_195No text annotation
IL_6I7O_196Isolated non-canonical cWW pair
IL_6I7O_197No text annotation
IL_6I7O_198No text annotation
IL_6I7O_199Single bulged A
IL_6I7O_200Single bulged U
IL_6I7O_201No text annotation
IL_6I7O_203tHW-tHW cross-strand stack
IL_6I7O_204Single bulged A
IL_6I7O_205Single bulged G
IL_6I7O_206Triple sheared
IL_6I7O_208Single bulged U
IL_6I7O_209Multiple bulged bases
IL_6I7O_210Isolated non-canonical cWW pair
IL_6I7O_211No text annotation
IL_6I7O_502No text annotation
IL_6I7O_212Kink-turn related
IL_6I7O_213Single bulged G
IL_6I7O_214No text annotation
IL_6I7O_477No text annotation
IL_6I7O_215Minor groove platform
IL_6I7O_216C-loop with bulged stacked A's
IL_6I7O_217Tandem non-canonical cWW pairs
IL_6I7O_218Isolated non-canonical cWW pair
IL_6I7O_219No text annotation
IL_6I7O_478No text annotation
IL_6I7O_503No text annotation
IL_6I7O_220Isolated non-canonical cWW pair
IL_6I7O_221Single bulged G
IL_6I7O_222Isolated non-canonical cWW pair
IL_6I7O_223UAA/GAN
IL_6I7O_224SSU/LSU pseudoknot
IL_6I7O_225Single bulged U
IL_6I7O_226No text annotation
IL_6I7O_227No text annotation
IL_6I7O_228Single bulged U
IL_6I7O_229Kink-turn
IL_6I7O_230No text annotation
IL_6I7O_231Major groove platform with extra cWW
IL_6I7O_232No text annotation
IL_6I7O_233Single bulged A
IL_6I7O_234Kink-turn
IL_6I7O_235Single bulged A
IL_6I7O_236No text annotation
IL_6I7O_237Major groove platform; stack outside cWW
IL_6I7O_238No text annotation
IL_6I7O_479C-loop
IL_6I7O_239UAA/GAN
IL_6I7O_240No text annotation
IL_6I7O_480Major groove platform related
IL_6I7O_241Isolated non-canonical cWW with bulges
IL_6I7O_242No text annotation
IL_6I7O_243Triple sheared
IL_6I7O_244Isolated non-canonical cWW pair
IL_6I7O_245Single bulged C
IL_6I7O_246Single stack bend
IL_6I7O_247No text annotation
IL_6I7O_248No text annotation
IL_6I7O_249Kink-turn
IL_6I7O_254tSH-tSH-tHH-tHS
IL_6I7O_255Isolated non-canonical cWW pair
IL_6I7O_256No text annotation
IL_6I7O_259No text annotation
IL_6I7O_260Multiple bulged bases
IL_6I7O_261Single stack bend
IL_6I7O_482No text annotation
IL_6I7O_262No text annotation
IL_6I7O_263No text annotation
IL_6I7O_264No text annotation
IL_6I7O_266No text annotation
IL_6I7O_268Single bulged U
IL_6I7O_269Minor groove platform
IL_6I7O_270No text annotation
IL_6I7O_272Single bulged A
IL_6I7O_273Isolated tHS basepair with bulges
IL_6I7O_274Single bulged A
IL_6I7O_275Tandem non-canonical cWW pairs
IL_6I7O_276Single stack bend
IL_6I7O_277Major groove platform
IL_6I7O_483No text annotation
IL_6I7O_278Isolated non-canonical cWW pair
IL_6I7O_279Major groove platform
IL_6I7O_280Major groove minor groove platform with extra cWW
IL_6I7O_281No text annotation
IL_6I7O_282Major groove platform
IL_6I7O_283Isolated non-canonical cWW with bulges
IL_6I7O_284No text annotation
IL_6I7O_285Isolated non-canonical cWW pair
IL_6I7O_484No text annotation
IL_6I7O_286Major groove platform with intercalation
IL_6I7O_287Isolated non-canonical cWW pair
IL_6I7O_288Single bulged A
IL_6I7O_289Double sheared
IL_6I7O_290Isolated non-canonical cWW pair
IL_6I7O_2918x7 Sarcin-Ricin; G-bulge
IL_6I7O_293UAA/GAN related
IL_6I7O_294No text annotation
IL_6I7O_295UAA/GAN
IL_6I7O_296Isolated non-canonical cWW pair
IL_6I7O_297Isolated non-canonical cWW pair
IL_6I7O_298Single bulged A
IL_6I7O_299No text annotation
IL_6I7O_300Single bulged U
IL_6I7O_301No text annotation
IL_6I7O_302Isolated non-canonical cWW pair
IL_6I7O_303Tandem non-canonical cWW pairs
IL_6I7O_304Tandem non-canonical cWW pairs
IL_6I7O_305Single bulged U
IL_6I7O_306Single bulged U
IL_6I7O_307Isolated non-canonical cWW pair
IL_6I7O_308No text annotation
IL_6I7O_309Multiple bulged bases
IL_6I7O_310Double sheared
IL_6I7O_311Multiple bulged bases
IL_6I7O_312Single bulged A
IL_6I7O_313Minor groove platform related
IL_6I7O_314Minor groove platform
IL_6I7O_315Single stack bend
IL_6I7O_316Symmetric double minor groove platform
IL_6I7O_3178x7 Sarcin-Ricin; G-bulge
IL_6I7O_318Isolated non-canonical cWW pair
IL_6I7O_319Isolated non-canonical cWW pair
IL_6I7O_320Single bulged U
IL_6I7O_321No text annotation
IL_6I7O_485No text annotation
IL_6I7O_322Single bulged C
IL_6I7O_323Single bulged U
IL_6I7O_324No text annotation
IL_6I7O_326No text annotation
IL_6I7O_327No text annotation
IL_6I7O_328Isolated non-canonical cWW pair
IL_6I7O_329Single stack bend
IL_6I7O_504No text annotation
IL_6I7O_330No text annotation
IL_6I7O_331No text annotation
IL_6I7O_332Single bulged U
IL_6I7O_333Single bulged A
IL_6I7O_334No text annotation
IL_6I7O_335Triple sheared with non-canonical cWW
IL_6I7O_336Isolated non-canonical cWW pair
IL_6I7O_337Kink-turn related
IL_6I7O_338Single bulged A
IL_6I7O_339No text annotation
IL_6I7O_340No text annotation
IL_6I7O_341Isolated non-canonical cWW pair
IL_6I7O_342No text annotation
IL_6I7O_343UAA/GAN variation
IL_6I7O_344Single bulged A
IL_6I7O_345Single bulged U
IL_6I7O_346No text annotation
IL_6I7O_349Single bulged A
IL_6I7O_350Single bulged G
IL_6I7O_351Triple sheared
IL_6I7O_352Major groove platform with extra cWW
IL_6I7O_353Single bulged U
IL_6I7O_355Isolated non-canonical cWW pair
IL_6I7O_356No text annotation
IL_6I7O_486No text annotation
IL_6I7O_357Kink-turn related
IL_6I7O_358Single bulged G
IL_6I7O_3597x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6I7O_487No text annotation
IL_6I7O_360Minor groove platform
IL_6I7O_361C-loop
IL_6I7O_362Tandem non-canonical cWW pairs
IL_6I7O_363Isolated non-canonical cWW pair
IL_6I7O_364No text annotation
IL_6I7O_488No text annotation
IL_6I7O_505No text annotation
IL_6I7O_365Isolated non-canonical cWW pair
IL_6I7O_489No text annotation
IL_6I7O_366Single bulged A
IL_6I7O_367Isolated non-canonical cWW pair
IL_6I7O_368No text annotation
IL_6I7O_369UAA/GAN
IL_6I7O_370SSU/LSU pseudoknot
IL_6I7O_371Single bulged U
IL_6I7O_372No text annotation
IL_6I7O_373No text annotation
IL_6I7O_374Single bulged U
IL_6I7O_375Kink-turn
IL_6I7O_376No text annotation
IL_6I7O_377Major groove platform with extra cWW
IL_6I7O_379Single bulged A
IL_6I7O_380Kink-turn
IL_6I7O_381Single bulged A
IL_6I7O_382No text annotation
IL_6I7O_383Major groove platform; stack outside cWW
IL_6I7O_384No text annotation
IL_6I7O_490C-loop
IL_6I7O_385UAA/GAN
IL_6I7O_386No text annotation
IL_6I7O_491No text annotation
IL_6I7O_387No text annotation
IL_6I7O_388No text annotation
IL_6I7O_389Triple sheared
IL_6I7O_390Isolated non-canonical cWW pair
IL_6I7O_391Single bulged C
IL_6I7O_392Single stack bend
IL_6I7O_393No text annotation
IL_6I7O_394No text annotation
IL_6I7O_395Kink-turn
IL_6I7O_396No text annotation
IL_6I7O_397No text annotation
IL_6I7O_398Major groove platform; stack outside cWW
IL_6I7O_492No text annotation
IL_6I7O_399Intercalated tWH
IL_6I7O_400No text annotation
IL_6I7O_401Isolated non-canonical cWW pair
IL_6I7O_402No text annotation
IL_6I7O_403Single bulged A
IL_6I7O_404Kink-turn related
IL_6I7O_405No text annotation
IL_6I7O_407No text annotation
IL_6I7O_408No text annotation
IL_6I7O_411No text annotation
IL_6I7O_416No text annotation
IL_6I7O_506No text annotation
IL_6I7O_417Single bulged A
IL_6I7O_418No text annotation
IL_6I7O_419Single bulged A
IL_6I7O_420Tandem non-canonical cWW pairs
IL_6I7O_421Single stack bend
IL_6I7O_423Isolated non-canonical cWW pair
IL_6I7O_424Major groove platform
IL_6I7O_494Major groove minor groove platform with extra cWW
IL_6I7O_425No text annotation
IL_6I7O_426No text annotation
IL_6I7O_427Major groove platform
IL_6I7O_428No text annotation
IL_6I7O_429Multiple bulged bases
IL_6I7O_430Isolated non-canonical cWW pair
IL_6I7O_495No text annotation
IL_6I7O_431Major groove platform with intercalation
IL_6I7O_432Isolated non-canonical cWW pair
IL_6I7O_433Single bulged A
IL_6I7O_434Double sheared
IL_6I7O_435Isolated non-canonical cWW pair
IL_6I7O_4368x7 Sarcin-Ricin; G-bulge
IL_6I7O_437Major groove minor groove platform with tHH
IL_6I7O_438UAA/GAN related
IL_6I7O_439No text annotation
IL_6I7O_440UAA/GAN
IL_6I7O_441Isolated non-canonical cWW pair
IL_6I7O_442Isolated non-canonical cWW pair
IL_6I7O_443Single bulged A
IL_6I7O_444No text annotation
IL_6I7O_445No text annotation
IL_6I7O_446Isolated non-canonical cWW pair
IL_6I7O_447Tandem non-canonical cWW pairs
IL_6I7O_448Tandem non-canonical cWW pairs
IL_6I7O_449Single bulged U
IL_6I7O_450Single bulged U
IL_6I7O_451Isolated non-canonical cWW pair
IL_6I7O_452No text annotation
IL_6I7O_453Major groove intercalation
IL_6I7O_454Double sheared
IL_6I7O_455Multiple bulged bases
IL_6I7O_456Single bulged A
IL_6I7O_457Minor groove platform related
IL_6I7O_458Minor groove platform
IL_6I7O_459Single stack bend
IL_6I7O_460Symmetric double minor groove platform
IL_6I7O_4618x7 Sarcin-Ricin; G-bulge
IL_6I7O_462Isolated non-canonical cWW pair
IL_6I7O_463No text annotation
IL_6I7O_464Isolated non-canonical cWW pair
IL_6I7O_465Single bulged U
IL_6I7O_466Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6I7O_0041/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6I7O_0051/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_6I7O_0481/YQ/814:820,
1/YQ/905:907,
1/YQ/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_6I7O_0531/YQ/1488:1491,
1/YQ/1837:1843,
1/YQ/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J4_6I7O_0021/2/622:624,
1/2/975:980,
1/2/1021:1032,
1/2/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_6I7O_0041/2b/622:624,
1/2b/975:980,
1/2b/1021:1032,
1/2b/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_6I7O_0071/BQ/1451:1457,
1/BQ/1475:1476,
1/BQ/1877:1880,
1/BQ/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_34212.1
J4_6I7O_0221/YQ/2130:2134,
1/YQ/2146:2150,
1/YQ/2186:2190,
1/YQ/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_6I7O_0231/YQ/2192:2194,
1/YQ/2248:2249,
1/YQ/2267:2276,
1/YQ/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J5_6I7O_0021/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:411,
1/2/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_6I7O_0141/BQ/1906:1914,
1/BQ/1938:1939,
1/BQ/2109:2110,
1/BQ/2114:2122,
1/BQ/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_99177.1
J5_6I7O_0151/BQ/2399:2406,
1/BQ/2815:2823,
1/BQ/2867:2876,
1/BQ/2951:2957,
1/BQ/2975:2980		No text annotation
J5_6I7O_0181/YQ/658:663,
1/YQ/799:802,
1/YQ/941:944,
1/YQ/1375:1376,
1/YQ/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_6I7O_0211/YQ/2399:2406,
1/YQ/2815:2823,
1/YQ/2867:2876,
1/YQ/2951:2957,
1/YQ/2975:2980		No text annotation
J5_6I7O_0221/YQ/2416:2419,
1/YQ/2611:2614,
1/YQ/2627:2628,
1/YQ/2650:2651,
1/YQ/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_6I7O_0041/YQ/2416:2419,
1/YQ/2611:2614,
1/YQ/2627:2628,
1/YQ/2650:2653,
1/YQ/2754:2765,
1/YQ/2793:2804		No text annotation
J7_6I7O_0021/YQ/949:954,
1/YQ/967:968,
1/YQ/1114:1117,
1/YQ/1141:1146,
1/YQ/1157:1161,
1/YQ/1338:1339,
1/YQ/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_6I7O_001No text annotation
J3_6I7O_062No text annotation
J3_6I7O_063No text annotation
J3_6I7O_002No text annotation
J3_6I7O_064No text annotation
J3_6I7O_003No text annotation
J3_6I7O_006No text annotation
J3_6I7O_007No text annotation
J3_6I7O_065No text annotation
J3_6I7O_008No text annotation
J3_6I7O_066No text annotation
J3_6I7O_009No text annotation
J3_6I7O_092No text annotation
J3_6I7O_010No text annotation
J3_6I7O_011No text annotation
J3_6I7O_012No text annotation
J3_6I7O_067No text annotation
J3_6I7O_013No text annotation
J3_6I7O_014No text annotation
J3_6I7O_068No text annotation
J3_6I7O_069No text annotation
J3_6I7O_015No text annotation
J3_6I7O_070No text annotation
J3_6I7O_016No text annotation
J3_6I7O_017No text annotation
J3_6I7O_018No text annotation
J3_6I7O_019No text annotation
J3_6I7O_020No text annotation
J3_6I7O_071No text annotation
J3_6I7O_021No text annotation
J3_6I7O_022No text annotation
J3_6I7O_023No text annotation
J3_6I7O_024No text annotation
J3_6I7O_025No text annotation
J3_6I7O_072No text annotation
J3_6I7O_026No text annotation
J3_6I7O_027No text annotation
J3_6I7O_073No text annotation
J3_6I7O_074No text annotation
J3_6I7O_075No text annotation
J3_6I7O_028No text annotation
J3_6I7O_076No text annotation
J3_6I7O_029No text annotation
J3_6I7O_030No text annotation
J3_6I7O_031No text annotation
J3_6I7O_032No text annotation
J3_6I7O_033No text annotation
J3_6I7O_034No text annotation
J3_6I7O_035No text annotation
J3_6I7O_036No text annotation
J3_6I7O_077No text annotation
J3_6I7O_037No text annotation
J3_6I7O_078No text annotation
J3_6I7O_038No text annotation
J3_6I7O_039No text annotation
J3_6I7O_079No text annotation
J3_6I7O_080No text annotation
J3_6I7O_040No text annotation
J3_6I7O_041No text annotation
J3_6I7O_081No text annotation
J3_6I7O_042No text annotation
J3_6I7O_043No text annotation
J3_6I7O_044No text annotation
J3_6I7O_045No text annotation
J3_6I7O_082No text annotation
J3_6I7O_083No text annotation
J3_6I7O_084No text annotation
J3_6I7O_046No text annotation
J3_6I7O_085No text annotation
J3_6I7O_047No text annotation
J3_6I7O_049No text annotation
J3_6I7O_050No text annotation
J3_6I7O_051No text annotation
J3_6I7O_052No text annotation
J3_6I7O_054No text annotation
J3_6I7O_086No text annotation
J3_6I7O_055No text annotation
J3_6I7O_087No text annotation
J3_6I7O_088No text annotation
J3_6I7O_056No text annotation
J3_6I7O_057No text annotation
J3_6I7O_089No text annotation
J3_6I7O_058No text annotation
J3_6I7O_059No text annotation
J3_6I7O_090No text annotation
J3_6I7O_060No text annotation
J3_6I7O_061No text annotation
J3_6I7O_091No text annotation
J4_6I7O_001No text annotation
J4_6I7O_003No text annotation
J4_6I7O_005No text annotation
J4_6I7O_006No text annotation
J4_6I7O_008No text annotation
J4_6I7O_009No text annotation
J4_6I7O_010No text annotation
J4_6I7O_011No text annotation
J4_6I7O_012No text annotation
J4_6I7O_013No text annotation
J4_6I7O_014No text annotation
J4_6I7O_015No text annotation
J4_6I7O_016No text annotation
J4_6I7O_017No text annotation
J4_6I7O_018No text annotation
J4_6I7O_019No text annotation
J4_6I7O_020No text annotation
J4_6I7O_021No text annotation
J4_6I7O_024No text annotation
J4_6I7O_025No text annotation
J4_6I7O_026No text annotation
J4_6I7O_027No text annotation
J4_6I7O_028No text annotation
J4_6I7O_029tRNA junction
J4_6I7O_030tRNA junction
J4_6I7O_031No text annotation
J5_6I7O_001No text annotation
J5_6I7O_003No text annotation
J5_6I7O_004No text annotation
J5_6I7O_005No text annotation
J5_6I7O_006No text annotation
J5_6I7O_007No text annotation
J5_6I7O_008No text annotation
J5_6I7O_009No text annotation
J5_6I7O_023No text annotation
J5_6I7O_010No text annotation
J5_6I7O_011No text annotation
J5_6I7O_012No text annotation
J5_6I7O_013No text annotation
J5_6I7O_016No text annotation
J5_6I7O_017No text annotation
J5_6I7O_019No text annotation
J5_6I7O_020No text annotation
J6_6I7O_001No text annotation
J6_6I7O_002No text annotation
J6_6I7O_003No text annotation
J7_6I7O_001No text annotation

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