RNA 3D Hub //

6I7O Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6I7O_0011/2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6I7O_0021/2/70:81No text annotation
homologous
HL_4V88_187
NA
HL_6I7O_0031/2/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6I7O_0041/2/190:195No text annotation
homologous
HL_4V88_189
NA
HL_6I7O_0051/2/230:235UNCG
geometric
HL_5J7L_171
HL_34617.5
HL_6I7O_0061/2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6I7O_0071/2/276:279Mini UNCG
homologous
HL_4V88_192
NA
HL_6I7O_0081/2/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6I7O_0091/2/368:373No text annotation
homologous
HL_4V88_194
NA
HL_6I7O_0101/2/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6I7O_0111/2/414:419UNCG
homologous
HL_4V88_196
NA
HL_6I7O_0121/2/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6I7O_0131/2/487:500No text annotation
HL_6I7O_0141/2/520:532No text annotation
homologous
HL_4V88_199
NA
HL_6I7O_0151/2/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_6I7O_0161/2/703:735No text annotation
HL_6I7O_0171/2/764:772No text annotation
homologous
HL_4V88_203
NA
HL_6I7O_0181/2/777:783No text annotation
HL_6I7O_2481/2/829:843No text annotation
homologous
HL_8P9A_236
HL_88364.2
HL_6I7O_0201/2/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6I7O_0211/2/937:942GNRA
homologous
HL_4V88_207
NA
HL_6I7O_0221/2/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_6I7O_0231/2/1055:1064No text annotation
homologous
HL_8P9A_212
HL_97917.2
HL_6I7O_0241/2/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_6I7O_0251/2/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_6I7O_0261/2/1188:1197No text annotation
homologous
HL_4V88_212
NA
HL_6I7O_0271/2/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_6I7O_0281/2/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_6I7O_0291/2/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_6I7O_0301/2/1359:1364No text annotation
homologous
HL_4V88_216
NA
HL_6I7O_0311/2/1396:1402GNRA
homologous
HL_4V88_217
NA
HL_6I7O_0321/2/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_6I7O_0331/2/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_6I7O_0341/2/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_6I7O_0361/2/1778:1783GNRA variation
homologous
HL_4V88_222
NA
HL_6I7O_0371/2b/7:17No text annotation
geometric
HL_4V88_186
NA
HL_6I7O_0381/2b/70:81No text annotation
geometric
HL_7RQB_011
NA
HL_6I7O_0391/2b/154:160GNRA related
geometric
HL_4V88_188
NA
HL_6I7O_0401/2b/190:195No text annotation
geometric
HL_4V88_189
NA
HL_6I7O_0411/2b/230:235UNCG
geometric
HL_5J7L_171
HL_34617.5
HL_6I7O_0421/2b/243:250T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_6I7O_0431/2b/276:279Mini UNCG
geometric
HL_7A0S_039
HL_48778.2
HL_6I7O_0441/2b/330:338GNRA related
geometric
HL_4V88_193
NA
HL_6I7O_0451/2b/368:373No text annotation
geometric
HL_4V88_194
NA
HL_6I7O_0461/2b/393:404No text annotation
geometric
HL_4V88_195
NA
HL_6I7O_0471/2b/414:419UNCG
geometric
HL_4V88_196
NA
HL_6I7O_0481/2b/450:456No text annotation
geometric
HL_5TBW_006
NA
HL_6I7O_0491/2b/491:496No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_6I7O_0501/2b/520:532No text annotation
geometric
HL_4V88_199
NA
HL_6I7O_0511/2b/569:574GNRA variation
geometric
HL_4V88_200
NA
HL_6I7O_0531/2b/716:722No text annotation
HL_6I7O_0541/2b/764:772No text annotation
geometric
HL_4V88_203
NA
HL_6I7O_0551/2b/777:783No text annotation
homologous
HL_8P9A_207
HL_48417.5
HL_6I7O_2491/2b/829:843No text annotation
homologous
HL_8P9A_236
HL_88364.2
HL_6I7O_0571/2b/900:909No text annotation
geometric
HL_4V88_206
NA
HL_6I7O_0581/2b/937:942GNRA
geometric
HL_4V88_207
NA
HL_6I7O_0591/2b/997:1007No text annotation
geometric
HL_5J7L_017
HL_75293.5
HL_6I7O_0601/2b/1055:1064No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_6I7O_0611/2b/1084:1089GNRA
geometric
HL_4V88_210
NA
HL_6I7O_0621/2b/1121:1126GNRA
geometric
HL_5J7L_004
HL_37824.7
HL_6I7O_0631/2b/1188:1197No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_6I7O_0641/2b/1238:1247Anticodon loop related
geometric
HL_4V88_213
NA
HL_6I7O_0651/2b/1296:1301GNRA
geometric
HL_5J7L_023
HL_37824.7
HL_6I7O_0661/2b/1309:1316No text annotation
geometric
HL_4V88_215
NA
HL_6I7O_0671/2b/1359:1364No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_6I7O_0681/2b/1396:1402GNRA
geometric
HL_5J7L_026
HL_93535.1
HL_6I7O_0691/2b/1501:1506GNRA
geometric
HL_4Y1M_002
HL_37824.7
HL_6I7O_0701/2b/1550:1561No text annotation
geometric
HL_4V88_219
NA
HL_6I7O_0711/2b/1594:1602No text annotation
geometric
HL_4V88_220
NA
HL_6I7O_0731/2b/1778:1783GNRA variation
geometric
HL_4V88_222
NA
HL_6I7O_0741/BQ/38:45No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_6I7O_0751/BQ/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_6I7O_0761/BQ/90:96No text annotation
homologous
HL_5TBW_003
NA
HL_6I7O_0771/BQ/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_6I7O_0781/BQ/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6I7O_0791/BQ/208:212No text annotation
homologous
HL_8C3A_006
NA
HL_6I7O_0801/BQ/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_6I7O_0811/BQ/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_6I7O_0821/BQ/303:312Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.2
HL_6I7O_0831/BQ/357:362GNRA
homologous
HL_8C3A_010
NA
HL_6I7O_0841/BQ/382:387GNRA
homologous
HL_5TBW_011
NA
HL_6I7O_2431/BQ/543:548No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6I7O_0861/BQ/599:604GNRA
homologous
HL_5TBW_013
NA
HL_6I7O_0871/BQ/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6I7O_0881/BQ/686:694No text annotation
homologous
HL_5TBW_015
NA
HL_6I7O_0891/BQ/707:712GNRA
homologous
HL_8C3A_016
NA
HL_6I7O_0901/BQ/732:737GNRA
homologous
HL_5TBW_017
NA
HL_6I7O_0911/BQ/763:768No text annotation
homologous
HL_5TBW_018
NA
HL_6I7O_0921/BQ/844:849GNRA
homologous
HL_5TBW_019
NA
HL_6I7O_0931/BQ/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_6I7O_0941/BQ/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_6I7O_0951/BQ/958:963No text annotation
homologous
HL_8P9A_134
HL_70782.2
HL_6I7O_2441/BQ/1023:1029No text annotation
HL_6I7O_0971/BQ/1076:1083No text annotation
geometric
HL_5TBW_024
NA
HL_6I7O_0981/BQ/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_6I7O_0991/BQ/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_6I7O_1001/BQ/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_6I7O_1011/BQ/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_6I7O_1031/BQ/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_6I7O_1041/BQ/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6I7O_1051/BQ/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_6I7O_1061/BQ/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_6I7O_1081/BQ/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_6I7O_1091/BQ/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_6I7O_1101/BQ/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_6I7O_1111/BQ/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_6I7O_1121/BQ/1759:1766No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_6I7O_1131/BQ/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_6I7O_1141/BQ/1844:1851No text annotation
homologous
HL_8C3A_041
NA
HL_6I7O_1151/BQ/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_6I7O_1161/BQ/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_6I7O_1181/BQ/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_6I7O_1191/BQ/2135:2145No text annotation
homologous
HL_5TBW_046
NA
HL_6I7O_1201/BQ/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_6I7O_1211/BQ/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_6I7O_1221/BQ/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_6I7O_1231/BQ/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_6I7O_1241/BQ/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_6I7O_1261/BQ/2536:2543Mini UNCG
geometric
HL_8DP3_002
HL_48778.2
HL_6I7O_1271/BQ/2568:2573No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6I7O_1281/BQ/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_6I7O_1291/BQ/2633:2645No text annotation
homologous
HL_8C3A_056
NA
HL_6I7O_1301/BQ/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_6I7O_1311/BQ/2693:2700Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_6I7O_1321/BQ/2724:2732No text annotation
homologous
HL_5TBW_058
NA
HL_6I7O_1331/BQ/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_6I7O_1341/BQ/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_6I7O_1351/BQ/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_6I7O_1361/BQ/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_6I7O_1371/BQ/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_6I7O_1381/BQ/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_6I7O_1391/BQ/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_6I7O_1401/BQ/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6I7O_1411/BQ/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_6I7O_1421/BQ/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_6I7O_1431/BQ/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_6I7O_1441/BQ/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_6I7O_1451/BQ/3350:3353Mini UNCG
geometric
HL_7A0S_039
HL_48778.2
HL_6I7O_2451/BR/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6I7O_1461/BR/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6I7O_1471/BR/88:93GNRA
homologous
HL_5TBW_186
NA
HL_6I7O_1481/BS/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_6I7O_1491/BS/69:89No text annotation
homologous
HL_8P9A_187
HL_51921.1
HL_6I7O_1501/BS/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_6I7O_1511/BS/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_6I7O_1521/YQ/38:45No text annotation
homologous
HL_5TBW_001
NA
HL_6I7O_1531/YQ/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_6I7O_1541/YQ/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_6I7O_1551/YQ/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_6I7O_1561/YQ/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_6I7O_1571/YQ/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_6I7O_1581/YQ/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6I7O_1591/YQ/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_6I7O_1601/YQ/303:312Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6I7O_1611/YQ/357:362GNRA
homologous
HL_8C3A_010
NA
HL_6I7O_1621/YQ/382:387GNRA
homologous
HL_8C3A_011
NA
HL_6I7O_1631/YQ/543:548No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6I7O_1641/YQ/599:604GNRA
homologous
HL_5TBW_013
NA
HL_6I7O_1651/YQ/640:649T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6I7O_1661/YQ/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_6I7O_1671/YQ/707:712GNRA
homologous
HL_8C3A_016
NA
HL_6I7O_1681/YQ/732:737GNRA
homologous
HL_5TBW_017
NA
HL_6I7O_1691/YQ/763:768No text annotation
geometric
HL_5TBW_018
NA
HL_6I7O_1701/YQ/844:849GNRA
homologous
HL_5TBW_019
NA
HL_6I7O_1711/YQ/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_6I7O_1721/YQ/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_6I7O_1731/YQ/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_6I7O_1741/YQ/1023:1029No text annotation
HL_6I7O_1751/YQ/1076:1083No text annotation
homologous
HL_8C3A_024
NA
HL_6I7O_1761/YQ/1126:1132GNRA
homologous
HL_5TBW_025
NA
HL_6I7O_1771/YQ/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_6I7O_1781/YQ/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_6I7O_1791/YQ/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_6I7O_1811/YQ/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_6I7O_1821/YQ/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6I7O_1831/YQ/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_6I7O_1841/YQ/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_6I7O_1861/YQ/1599:1608No text annotation
homologous
HL_5TBW_035
NA
HL_6I7O_1871/YQ/1634:1639GNRA
homologous
HL_8C3A_036
NA
HL_6I7O_1881/YQ/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_6I7O_1891/YQ/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_6I7O_1901/YQ/1759:1766No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_6I7O_1911/YQ/1792:1796No text annotation
homologous
HL_8C3A_040
NA
HL_6I7O_1921/YQ/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_6I7O_1931/YQ/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_6I7O_1941/YQ/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_6I7O_1961/YQ/2110:2114No text annotation
homologous
HL_5TBW_045
NA
HL_6I7O_1971/YQ/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_6I7O_1981/YQ/2164:2170GNRA
homologous
HL_5TBW_047
NA
HL_6I7O_1991/YQ/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_6I7O_2001/YQ/2253:2263No text annotation
homologous
HL_5TBW_049
NA
HL_6I7O_2011/YQ/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_6I7O_2021/YQ/2369:2378No text annotation
homologous
HL_5TBW_051
NA
HL_6I7O_2041/YQ/2536:2543Mini UNCG
geometric
HL_7A0S_039
HL_48778.2
HL_6I7O_2051/YQ/2568:2573Externally structured
geometric
HL_5TBW_022
NA
HL_6I7O_2061/YQ/2616:2624No text annotation
homologous
HL_5TBW_054
NA
HL_6I7O_2071/YQ/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_6I7O_2081/YQ/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_6I7O_2091/YQ/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6I7O_2101/YQ/2724:2732No text annotation
homologous
HL_5TBW_058
NA
HL_6I7O_2111/YQ/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_6I7O_2121/YQ/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_6I7O_2131/YQ/2840:2848No text annotation
homologous
HL_8C3A_062
NA
HL_6I7O_2141/YQ/2897:2904No text annotation
homologous
HL_5TBW_062
NA
HL_6I7O_2151/YQ/2920:2926No text annotation
geometric
HL_5TBW_063
NA
HL_6I7O_2161/YQ/2963:2968GNRA
homologous
HL_5TBW_064
NA
HL_6I7O_2171/YQ/3025:3030GNRA
geometric
HL_1L9A_002
HL_37824.7
HL_6I7O_2181/YQ/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6I7O_2191/YQ/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_6I7O_2201/YQ/3193:3199No text annotation
geometric
HL_5J7L_018
HL_37344.1
HL_6I7O_2211/YQ/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_6I7O_2221/YQ/3303:3311No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_6I7O_2231/YQ/3350:3353Mini UNCG
geometric
HL_7A0S_039
HL_48778.2
HL_6I7O_2461/YR/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6I7O_2241/YR/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6I7O_2251/YR/88:93GNRA
homologous
HL_5TBW_186
NA
HL_6I7O_2471/YS/47:56No text annotation
homologous
HL_8P9A_186
HL_93438.2
HL_6I7O_2261/YS/69:89No text annotation
homologous
HL_8C3A_230
NA
HL_6I7O_2271/YS/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_6I7O_2281/YS/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_6I7O_2291/m/12:23No text annotation
homologous
HL_4V7M_038
HL_23010.1
HL_6I7O_2301/m/31:39tRNA anticodon loop
homologous
HL_4V9Q_214
HL_06059.6
HL_6I7O_2311/m/52:60T-loop with 2 stacked bulged bases
homologous
HL_2BTE_004
HL_28252.8
HL_6I7O_2321/mb/13:23tRNA D-loop
geometric
HL_5B63_003
HL_20811.4
HL_6I7O_2331/mb/32:40tRNA anticodon loop
geometric
HL_4TUE_034
HL_06059.6
HL_6I7O_2341/mb/54:62T-loop with 2 stacked bulged bases
geometric
HL_2ZUE_003
HL_28252.8
HL_6I7O_2351/n/12:23No text annotation
geometric
HL_4JXZ_001
NA
HL_6I7O_2361/n/31:39tRNA anticodon loop
homologous
HL_7U2I_104
HL_06059.6
HL_6I7O_2371/n/53:61T-loop with 2 stacked bulged bases
geometric
HL_3W3S_004
HL_28252.8
HL_6I7O_2381/nb/13:22No text annotation
homologous
HL_6GSK_217
NA
HL_6I7O_2391/nb/29:41No text annotation
homologous
HL_6GSL_221
NA
HL_6I7O_2401/nb/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V90_034
HL_28252.8

Problematic loops

#loop idProblemSequence
HL_6I7O_241No text annotation
HL_6I7O_019Pseudoknot geometry
HL_6I7O_035No text annotation
HL_6I7O_052No text annotation
HL_6I7O_056No text annotation
HL_6I7O_242No text annotation
HL_6I7O_072No text annotation
HL_6I7O_085No text annotation
HL_6I7O_096No text annotation
HL_6I7O_102No text annotation
HL_6I7O_107No text annotation
HL_6I7O_117No text annotation
HL_6I7O_125No text annotation
HL_6I7O_180Externally structured
HL_6I7O_185tRNA D-loop
HL_6I7O_195No text annotation
HL_6I7O_203No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6I7O_0011/2/24:26,
1/2/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_6I7O_0021/2/35:37,
1/2/471:473		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6I7O_0031/2/37:41,
1/2/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_6I7O_0041/2/42:48,
1/2/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_6I7O_0051/2/50:52,
1/2/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6I7O_0061/2/58:63,
1/2/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6I7O_0071/2/64:69,
1/2/82:86		No text annotation
homologous
IL_8C3A_398
NA
IL_6I7O_0081/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6I7O_0091/2/113:116,
1/2/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6I7O_0101/2/117:122,
1/2/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6I7O_0111/2/143:149,
1/2/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6I7O_0121/2/150:152,
1/2/162:164		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_6I7O_0131/2/186:189,
1/2/196:199		Double sheared
homologous
IL_4V88_396
NA
IL_6I7O_0141/2/204:206,
1/2/259:263		Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_6I7O_0151/2/206:208,
1/2/257:259		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_6I7O_0161/2/265:267,
1/2/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6I7O_0171/2/270:273,
1/2/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6I7O_0181/2/275:276,
1/2/279:281		Single bulged U
geometric
IL_4V88_401
NA
IL_6I7O_0191/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6I7O_0201/2/318:323,
1/2/345:346		No text annotation
homologous
IL_4V88_403
NA
IL_6I7O_0211/2/363:365,
1/2/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_6I7O_0221/2/389:391,
1/2/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6I7O_0231/2/411:413,
1/2/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6I7O_0241/2/439:441,
1/2/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_6I7O_0251/2/443:447,
1/2/460:461		C-loop
geometric
IL_4LFB_015
IL_03109.3
IL_6I7O_0261/2/447:448,
1/2/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_6I7O_0271/2/480:483,
1/2/504:508		No text annotation
IL_6I7O_0281/2/517:518,
1/2/533:535		Minor groove platform
geometric
IL_4V88_388
NA
IL_6I7O_0291/2/518:520,
1/2/532:533		Minor groove platform
geometric
IL_4V88_388
NA
IL_6I7O_0301/2/550:557,
1/2/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6I7O_0311/2/557:559,
1/2/586:587		Single bulged U
homologous
IL_4V88_414
NA
IL_6I7O_0321/2/562:568,
1/2/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_6I7O_0331/2/616:622,
1/2/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_6I7O_0341/2/624:626,
1/2/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6I7O_0351/2/627:631,
1/2/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_6I7O_0361/2/646:648,
1/2/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_6I7O_0371/2/651:658,
1/2/676:683		No text annotation
IL_6I7O_4961/2/746:747,
1/2/802:805		No text annotation
homologous
IL_8CRE_428
IL_68140.4
IL_6I7O_0391/2/748:750,
1/2/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6I7O_0401/2/751:759,
1/2/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_6I7O_0411/2/817:822,
1/2/850:854		No text annotation
IL_6I7O_0421/2/865:866,
1/2/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_6I7O_4671/2/868:870,
1/2/957:960		Isolated cWH basepair
homologous
IL_8C3A_510
NA
IL_6I7O_0441/2/871:874,
1/2/953:956		Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_6I7O_0451/2/874:878,
1/2/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6I7O_0461/2/885:888,
1/2/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6I7O_0471/2/893:899,
1/2/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6I7O_0481/2/985:990,
1/2/1014:1016		Other IL
homologous
IL_4V88_435
NA
IL_6I7O_0491/2/990:994,
1/2/1010:1014		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_6I7O_0501/2/1034:1036,
1/2/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_6I7O_0511/2/1041:1044,
1/2/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6I7O_0521/2/1051:1053,
1/2/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_6I7O_0531/2/1111:1118,
1/2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6I7O_0541/2/1146:1147,
1/2/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_6I7O_0551/2/1149:1151,
1/2/1627:1628		Single bulged G
homologous
IL_4V88_442
NA
IL_6I7O_0561/2/1157:1160,
1/2/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6I7O_0571/2/1173:1175,
1/2/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6I7O_0581/2/1178:1179,
1/2/1459:1461		Minor groove platform
homologous
IL_4V88_445
NA
IL_6I7O_0591/2/1213:1215,
1/2/1448:1450		Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_6I7O_0601/2/1224:1233,
1/2/1252:1259		Kink-turn
homologous
IL_4V88_447
NA
IL_6I7O_0611/2/1234:1236,
1/2/1249:1251		No text annotation
homologous
IL_4V88_448
NA
IL_6I7O_0621/2/1268:1270,
1/2/1440:1441		Single bulged U
homologous
IL_4V88_449
NA
IL_6I7O_0631/2/1272:1276,
1/2/1436:1438		Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_6I7O_4971/2/1272:1278,
1/2/1430:1438		No text annotation
geometric
IL_8P9A_439
IL_86012.1
IL_6I7O_4981/2/1276:1278,
1/2/1430:1436		No text annotation
homologous
IL_8P9A_440
IL_49061.1
IL_6I7O_0651/2/1280:1281,
1/2/1426:1428		Single bulged A
homologous
IL_4V88_452
NA
IL_6I7O_0661/2/1290:1292,
1/2/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6I7O_0671/2/1306:1308,
1/2/1317:1318		Minor groove platform
geometric
IL_4V88_454
NA
IL_6I7O_0681/2/1339:1342,
1/2/1383:1385		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_6I7O_0691/2/1345:1348,
1/2/1377:1380		Minor groove platform
homologous
IL_4V88_456
NA
IL_6I7O_0701/2/1352:1354,
1/2/1369:1373		Isolated non-canonical cWW pair
homologous
IL_4V88_457
NA
IL_6I7O_0711/2/1389:1391,
1/2/1407:1412		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_6I7O_0721/2/1480:1487,
1/2/1519:1527		No text annotation
homologous
IL_4V88_459
NA
IL_6I7O_0731/2/1488:1494,
1/2/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_6I7O_0741/2/1495:1498,
1/2/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_6I7O_0751/2/1540:1545,
1/2/1566:1571		No text annotation
geometric
IL_4V88_462
NA
IL_6I7O_0761/2/1636:1638,
1/2/1764:1767		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_6I7O_0771/2/1638:1641,
1/2/1760:1764		No text annotation
homologous
IL_4V88_464
NA
IL_6I7O_0781/2/1642:1644,
1/2/1757:1759		Isolated non-canonical cWW pair
geometric
IL_4ZC7_004
IL_87907.2
IL_6I7O_0791/2/1644:1647,
1/2/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_6I7O_0801/2/1650:1652,
1/2/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6I7O_0811/2/1653:1656,
1/2/1744:1747		Double sheared
geometric
IL_4V88_468
NA
IL_6I7O_0821/2/1656:1658,
1/2/1743:1744		Single bulged U
homologous
IL_4V88_469
NA
IL_6I7O_0831/2/1665:1667,
1/2/1734:1736		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6I7O_0841/2/1669:1672,
1/2/1729:1732		Double sheared
homologous
IL_4V88_471
NA
IL_6I7O_0851/2/1672:1674,
1/2/1727:1729		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_6I7O_0861/2/1675:1678,
1/2/1723:1726		Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_6I7O_0871/2/1678:1682,
1/2/1719:1723		Triple sheared
geometric
IL_4V88_474
NA
IL_6I7O_0881/2b/24:26,
1/2b/600:601		Single bulged C
geometric
IL_4V88_384
NA
IL_6I7O_0891/2b/35:37,
1/2b/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_6I7O_0901/2b/37:41,
1/2b/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_6I7O_0911/2b/42:48,
1/2b/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_6I7O_0921/2b/50:52,
1/2b/428:429		Minor groove platform
geometric
IL_4LFB_004
IL_51454.3
IL_6I7O_0931/2b/58:63,
1/2b/87:89		No text annotation
geometric
IL_4V88_389
NA
IL_6I7O_0941/2b/64:69,
1/2b/82:86		No text annotation
homologous
IL_8C3A_398
NA
IL_6I7O_0951/2b/109:112,
1/2b/302:305		Tandem non-canonical cWW pairs
geometric
IL_4V88_391
NA
IL_6I7O_0961/2b/113:116,
1/2b/300:301		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_6I7O_0971/2b/117:122,
1/2b/295:299		No text annotation
geometric
IL_4V88_393
NA
IL_6I7O_0981/2b/143:149,
1/2b/165:172		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_6I7O_0991/2b/150:152,
1/2b/162:164		Isolated cWH basepair
geometric
IL_5F5F_003
IL_10167.6
IL_6I7O_1001/2b/186:189,
1/2b/196:199		Double sheared
geometric
IL_1SAQ_002
NA
IL_6I7O_1011/2b/204:206,
1/2b/259:263		Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_6I7O_1021/2b/206:208,
1/2b/257:259		Isolated non-canonical cWW pair
geometric
IL_5TBW_115
NA
IL_6I7O_1031/2b/265:267,
1/2b/288:289		Single bulged A
geometric
IL_4V88_399
NA
IL_6I7O_1041/2b/270:273,
1/2b/283:285		No text annotation
geometric
IL_4V88_400
NA
IL_6I7O_1051/2b/275:276,
1/2b/279:281		Single bulged U
geometric
IL_4V88_401
NA
IL_6I7O_1061/2b/311:316,
1/2b/348:355		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_6I7O_1071/2b/318:323,
1/2b/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6I7O_1081/2b/363:365,
1/2b/376:381		No text annotation
geometric
IL_4V88_404
NA
IL_6I7O_1091/2b/389:391,
1/2b/406:408		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_6I7O_1101/2b/411:413,
1/2b/420:422		Isolated near basepair
geometric
IL_4V88_406
NA
IL_6I7O_1111/2b/439:441,
1/2b/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_6I7O_1121/2b/443:447,
1/2b/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6I7O_1131/2b/447:448,
1/2b/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_6I7O_1141/2b/480:483,
1/2b/504:508		No text annotation
IL_6I7O_4691/2b/480:485,
1/2b/502:508		No text annotation
IL_6I7O_1161/2b/517:518,
1/2b/533:535		Minor groove platform
geometric
IL_4V88_388
NA
IL_6I7O_1171/2b/518:520,
1/2b/532:533		Minor groove platform
geometric
IL_4V88_388
NA
IL_6I7O_1181/2b/550:557,
1/2b/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6I7O_1191/2b/557:559,
1/2b/586:587		Single bulged U
geometric
IL_4V88_414
NA
IL_6I7O_1201/2b/562:568,
1/2b/575:583		Kink-turn related
geometric
IL_4V88_415
NA
IL_6I7O_1211/2b/616:622,
1/2b/1104:1105		No text annotation
geometric
IL_4V88_416
NA
IL_6I7O_1221/2b/624:626,
1/2b/973:975		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_87907.2
IL_6I7O_1231/2b/627:631,
1/2b/968:972		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_6I7O_1241/2b/646:648,
1/2b/686:688		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
IL_87907.2
IL_6I7O_1251/2b/651:657,
1/2b/676:683		No text annotation
IL_6I7O_4701/2b/703:714,
1/2b/725:735		No text annotation
IL_6I7O_4711/2b/714:716,
1/2b/722:725		No text annotation
IL_6I7O_1261/2b/746:747,
1/2b/802:805		Major groove minor groove platform; mini C-loop
geometric
IL_4V88_423
NA
IL_6I7O_1271/2b/748:750,
1/2b/799:801		Isolated non-canonical cWW pair
geometric
IL_2O3Y_004
IL_28037.2
IL_6I7O_4991/2b/751:759,
1/2b/791:798		No text annotation
homologous
IL_8CRE_430
IL_59049.1
IL_6I7O_1301/2b/865:866,
1/2b/962:965		Major groove platform; stack outside cWW
geometric
IL_7RQB_050
NA
IL_6I7O_4721/2b/868:870,
1/2b/957:960		Isolated cWH basepair
homologous
IL_8C3A_510
NA
IL_6I7O_1321/2b/871:874,
1/2b/953:956		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_6I7O_1331/2b/874:878,
1/2b/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_6I7O_1341/2b/885:888,
1/2b/924:927		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_6I7O_1351/2b/893:899,
1/2b/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6I7O_1361/2b/985:990,
1/2b/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_6I7O_1371/2b/990:994,
1/2b/1010:1014		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_6I7O_1381/2b/1034:1036,
1/2b/1095:1101		No text annotation
geometric
IL_4V88_437
NA
IL_6I7O_1391/2b/1041:1044,
1/2b/1074:1077		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_6I7O_1401/2b/1051:1053,
1/2b/1066:1067		Single bulged U
geometric
IL_2PJP_001
IL_89505.4
IL_6I7O_1411/2b/1111:1118,
1/2b/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_5J7L_038
IL_41756.4
IL_6I7O_1421/2b/1146:1147,
1/2b/1630:1632		Single bulged A
geometric
IL_5J7L_039
IL_31462.6
IL_6I7O_1431/2b/1149:1151,
1/2b/1627:1628		Single bulged G
geometric
IL_4V88_442
NA
IL_6I7O_1441/2b/1157:1160,
1/2b/1617:1621		C-loop
geometric
IL_1KOG_007
IL_63596.11
IL_6I7O_1451/2b/1173:1175,
1/2b/1464:1466		Isolated non-canonical cWW pair
geometric
IL_4V88_444
NA
IL_6I7O_1461/2b/1178:1179,
1/2b/1459:1461		Minor groove platform
geometric
IL_4V88_445
NA
IL_6I7O_1471/2b/1213:1215,
1/2b/1448:1450		Isolated non-canonical cWW pair
geometric
IL_4E48_005
IL_87907.2
IL_6I7O_1481/2b/1224:1233,
1/2b/1252:1259		No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_6I7O_1491/2b/1234:1236,
1/2b/1249:1251		No text annotation
geometric
IL_4V88_448
NA
IL_6I7O_1501/2b/1268:1270,
1/2b/1440:1441		Single bulged U
geometric
IL_4V88_449
NA
IL_6I7O_1511/2b/1272:1276,
1/2b/1436:1438		Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_6I7O_4731/2b/1272:1278,
1/2b/1430:1438		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_6I7O_1521/2b/1276:1278,
1/2b/1430:1436		Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_6I7O_1531/2b/1280:1281,
1/2b/1426:1428		Single bulged A
geometric
IL_4V88_452
NA
IL_6I7O_1541/2b/1290:1292,
1/2b/1323:1325		Isolated cWH basepair
geometric
IL_5J7L_011
IL_10167.6
IL_6I7O_1551/2b/1306:1308,
1/2b/1317:1318		Minor groove platform
geometric
IL_4V88_454
NA
IL_6I7O_1561/2b/1339:1342,
1/2b/1383:1385		Isolated non-canonical cWW pair
geometric
IL_4V88_455
NA
IL_6I7O_1571/2b/1345:1348,
1/2b/1377:1380		Minor groove platform
geometric
IL_4V88_456
NA
IL_6I7O_5001/2b/1352:1354,
1/2b/1369:1373		Isolated non-canonical cWW pair
homologous
IL_8P9A_471
IL_07785.1
IL_6I7O_1591/2b/1389:1391,
1/2b/1407:1412		Major groove platform; stack outside cWW
geometric
IL_4V88_458
NA
IL_6I7O_1601/2b/1480:1487,
1/2b/1519:1527		No text annotation
geometric
IL_4V88_459
NA
IL_6I7O_1611/2b/1488:1494,
1/2b/1513:1518		180 degree turn
geometric
IL_4V88_460
NA
IL_6I7O_1621/2b/1495:1498,
1/2b/1509:1512		Tandem non-canonical cWW pairs
geometric
IL_4V88_461
NA
IL_6I7O_1631/2b/1540:1545,
1/2b/1566:1571		No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_6I7O_1641/2b/1636:1638,
1/2b/1764:1767		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_6I7O_1651/2b/1638:1641,
1/2b/1760:1764		No text annotation
geometric
IL_4V88_464
NA
IL_6I7O_1661/2b/1642:1644,
1/2b/1757:1759		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6I7O_1671/2b/1644:1647,
1/2b/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_6I7O_1681/2b/1650:1652,
1/2b/1748:1750		Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_6I7O_1691/2b/1653:1656,
1/2b/1744:1747		Double sheared
geometric
IL_4V88_468
NA
IL_6I7O_1701/2b/1656:1658,
1/2b/1743:1744		Single bulged U
geometric
IL_4V88_469
NA
IL_6I7O_1711/2b/1665:1667,
1/2b/1734:1736		Isolated non-canonical cWW pair
geometric
IL_4Y1M_005
IL_07785.1
IL_6I7O_1721/2b/1669:1672,
1/2b/1729:1732		Double sheared
geometric
IL_4V88_471
NA
IL_6I7O_1731/2b/1672:1674,
1/2b/1727:1729		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_87907.2
IL_6I7O_1741/2b/1675:1678,
1/2b/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_6I7O_1751/2b/1678:1682,
1/2b/1719:1723		Triple sheared
geometric
IL_4V88_474
NA
IL_6I7O_1771/BQ/7:8,
1/BS/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_6I7O_1781/BQ/13:15,
1/BS/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_6I7O_1791/BQ/27:28,
1/BQ/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_6I7O_1801/BQ/31:38,
1/BQ/45:53		No text annotation
homologous
IL_8C3A_005
NA
IL_6I7O_1811/BQ/82:89,
1/BQ/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_6I7O_1821/BQ/123:124,
1/BQ/144:149		No text annotation
homologous
IL_5TBW_007
NA
IL_6I7O_1831/BQ/125:127,
1/BQ/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_6I7O_1841/BQ/163:165,
1/BQ/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_6I7O_5011/BQ/169:170,
1/BQ/248:253		No text annotation
IL_6I7O_4761/BQ/177:178,
1/BQ/238:241		No text annotation
geometric
IL_5TBW_501
NA
IL_6I7O_1871/BQ/189:191,
1/BQ/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_6I7O_1881/BQ/337:339,
1/BS/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6I7O_1891/BQ/376:379,
1/BQ/390:403		No text annotation
homologous
IL_5TBW_014
NA
IL_6I7O_1901/BQ/404:410,
1/BS/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6I7O_1911/BQ/429:431,
1/BQ/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_6I7O_1931/BQ/512:513,
1/BQ/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_6I7O_1941/BQ/517:525,
1/BQ/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_6I7O_1951/BQ/531:538,
1/BQ/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_6I7O_1961/BQ/668:670,
1/BQ/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_6I7O_1971/BQ/680:684,
1/BQ/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_6I7O_1981/BQ/725:728,
1/BQ/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_6I7O_1991/BQ/752:753,
1/BQ/779:781		Single bulged A
homologous
IL_5TBW_024
NA
IL_6I7O_2001/BQ/755:756,
1/BQ/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_6I7O_2011/BQ/758:763,
1/BQ/768:773		No text annotation
geometric
IL_5TBW_026
NA
IL_6I7O_2021/BQ/803:805,
1/BQ/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6I7O_2031/BQ/805:809,
1/BQ/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6I7O_2041/BQ/828:829,
1/BQ/895:897		Single bulged A
geometric
IL_4V9F_025
IL_31462.6
IL_6I7O_2051/BQ/833:834,
1/BQ/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_6I7O_2061/BQ/834:838,
1/BQ/855:859		Triple sheared
geometric
IL_7RQB_021
NA
IL_6I7O_2071/BQ/869:872,
1/BQ/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6I7O_2081/BQ/873:875,
1/BQ/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_6I7O_2091/BQ/907:909,
1/BQ/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_6I7O_2101/BQ/954:956,
1/BQ/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6I7O_2111/BQ/969:970,
1/BQ/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_6I7O_5021/BQ/977:981,
1/BQ/1102:1104		No text annotation
homologous
IL_8P9A_264
IL_25463.1
IL_6I7O_2131/BQ/983:985,
1/BQ/1099:1100		Single bulged G
homologous
IL_5TBW_037
NA
IL_6I7O_2141/BQ/991:997,
1/BQ/1052:1058		No text annotation
homologous
IL_8C3A_041
NA
IL_6I7O_4771/BQ/991:998,
1/BQ/1050:1058		No text annotation
IL_6I7O_2151/BQ/997:998,
1/BQ/1050:1052		Minor groove platform
homologous
IL_8C3A_042
NA
IL_6I7O_2161/BQ/999:1004,
1/BQ/1046:1049		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_6I7O_2171/BQ/1006:1009,
1/BQ/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6I7O_2181/BQ/1009:1011,
1/BQ/1039:1041		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_6I7O_5031/BQ/1014:1018,
1/BQ/1034:1036		No text annotation
homologous
IL_8CRE_477
IL_31737.3
IL_6I7O_2201/BQ/1069:1071,
1/BQ/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_6I7O_2211/BQ/1074:1076,
1/BQ/1083:1084		Single bulged G
homologous
IL_8C3A_048
NA
IL_6I7O_2221/BQ/1120:1122,
1/BQ/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_6I7O_2231/BQ/1167:1171,
1/BQ/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_6I7O_2241/BQ/1173:1180,
1/BQ/1325:1326		SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_6I7O_2251/BQ/1180:1182,
1/BQ/1324:1325		Single bulged U
geometric
IL_5TBW_050
NA
IL_6I7O_2261/BQ/1187:1194,
1/BQ/1314:1319		No text annotation
homologous
IL_5TBW_051
NA
IL_6I7O_2271/BQ/1194:1205,
1/BQ/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_6I7O_2281/BQ/1207:1209,
1/BQ/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_6I7O_2291/BQ/1218:1226,
1/BQ/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_6I7O_2301/BQ/1234:1238,
1/BQ/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_6I7O_2311/BQ/1262:1266,
1/BQ/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_6I7O_2321/BQ/1376:1378,
1/BQ/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_6I7O_2331/BQ/1385:1387,
1/BQ/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_6I7O_2341/BQ/1388:1395,
1/BQ/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_6I7O_2351/BQ/1398:1400,
1/BQ/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_6I7O_2361/BQ/1444:1450,
1/BQ/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_6I7O_2371/BQ/1492:1495,
1/BQ/1835:1836		Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_50694.7
IL_6I7O_4791/BQ/1501:1505,
1/BQ/1513:1515		C-loop
homologous
IL_8C3A_482
NA
IL_6I7O_2391/BQ/1532:1536,
1/BQ/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6I7O_2401/BQ/1618:1621,
1/BQ/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_6I7O_4801/BQ/1623:1624,
1/BQ/1819:1822		Major groove platform related
homologous
IL_8P9A_293
IL_48076.6
IL_6I7O_2421/BQ/1627:1631,
1/BQ/1811:1816		No text annotation
geometric
IL_5TBW_066
NA
IL_6I7O_2431/BQ/1645:1649,
1/BQ/1806:1810		Triple sheared
geometric
IL_5TBW_067
NA
IL_6I7O_2441/BQ/1661:1663,
1/BQ/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_6I7O_2451/BQ/1669:1670,
1/BQ/1778:1780		Single bulged C
homologous
IL_5TBW_069
NA
IL_6I7O_2461/BQ/1670:1671,
1/BQ/1776:1778		Single stack bend
geometric
IL_5TBW_070
NA
IL_6I7O_2471/BQ/1694:1698,
1/BQ/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_6I7O_2481/BQ/1702:1707,
1/BQ/1737:1743		No text annotation
homologous
IL_8C3A_078
NA
IL_6I7O_2491/BQ/1711:1717,
1/BQ/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_6I7O_2501/BQ/1883:1889,
1/BQ/2346:2349		No text annotation
homologous
IL_5TBW_074
NA
IL_6I7O_2511/BQ/1895:1897,
1/BQ/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_6I7O_2521/BQ/1898:1901,
1/BQ/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_6I7O_4811/BQ/1898:1906,
1/BQ/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_6I7O_2531/BQ/1901:1906,
1/BQ/2333:2336		No text annotation
homologous
IL_8C3A_083
NA
IL_6I7O_2541/BQ/1918:1923,
1/BQ/1928:1934		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_6I7O_2551/BQ/1940:1942,
1/BQ/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6I7O_2561/BQ/1947:1948,
1/BQ/2098:2101		No text annotation
homologous
IL_5TBW_080
NA
IL_6I7O_2571/BQ/2128:2129,
1/BQ/2323:2325		Single bulged A
homologous
IL_5TBW_082
NA
IL_6I7O_2581/BQ/2156:2161,
1/BQ/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6I7O_2591/BQ/2196:2199,
1/BQ/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_6I7O_2601/BQ/2200:2201,
1/BQ/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6I7O_2611/BQ/2204:2206,
1/BQ/2237:2238		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6I7O_4821/BQ/2204:2210,
1/BQ/2235:2238		No text annotation
IL_6I7O_2621/BQ/2206:2210,
1/BQ/2235:2237		No text annotation
IL_6I7O_2631/BQ/2211:2217,
1/BQ/2228:2234		No text annotation
homologous
IL_8C3A_093
NA
IL_6I7O_2641/BQ/2276:2277,
1/BQ/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_6I7O_2651/BQ/2277:2288,
1/BQ/2304:2307		No text annotation
geometric
IL_5TBW_090
NA
IL_6I7O_2661/BQ/2391:2394,
1/BQ/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_6I7O_2671/BQ/2396:2398,
1/BQ/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_6I7O_2681/BQ/2409:2411,
1/BQ/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_6I7O_2691/BQ/2412:2413,
1/BQ/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6I7O_2701/BQ/2423:2425,
1/BQ/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_6I7O_2711/BQ/2519:2526,
1/BQ/2584:2588		No text annotation
IL_6I7O_2721/BQ/2614:2615,
1/BQ/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_6I7O_2731/BQ/2666:2668,
1/BQ/2686:2690		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_6I7O_2741/BQ/2714:2716,
1/BQ/2740:2741		Single bulged A
geometric
IL_4V88_399
NA
IL_6I7O_2751/BQ/2718:2721,
1/BQ/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6I7O_2761/BQ/2770:2773,
1/BQ/2787:2788		Single stack bend with bulge
homologous
IL_8C3A_110
NA
IL_6I7O_2771/BQ/2823:2824,
1/BQ/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_6I7O_4831/BQ/2823:2826,
1/BQ/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_6I7O_2781/BQ/2824:2826,
1/BQ/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6I7O_2791/BQ/2826:2828,
1/BQ/2862:2863		Major groove platform
geometric
IL_5TBW_104
NA
IL_6I7O_2801/BQ/2828:2830,
1/BQ/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_6I7O_2811/BQ/2835:2839,
1/BQ/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_6I7O_2821/BQ/2876:2877,
1/BQ/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_6I7O_2831/BQ/2879:2881,
1/BQ/2943:2947		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_6I7O_2841/BQ/2881:2882,
1/BQ/2940:2943		No text annotation
homologous
IL_8C3A_117
NA
IL_6I7O_2851/BQ/2889:2891,
1/BQ/2912:2914		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_87907.2
IL_6I7O_4841/BQ/2889:2892,
1/BQ/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_6I7O_2861/BQ/2891:2892,
1/BQ/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_6I7O_2871/BQ/2918:2920,
1/BQ/2926:2928		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_6I7O_2881/BQ/2960:2961,
1/BQ/2970:2972		Single bulged A
geometric
IL_1U9S_001
IL_31462.6
IL_6I7O_2891/BQ/3004:3007,
1/BQ/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_6I7O_2901/BQ/3012:3014,
1/BQ/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_6I7O_2911/BQ/3018:3025,
1/BQ/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_6I7O_2921/BQ/3047:3051,
1/BQ/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_6I7O_2931/BQ/3054:3059,
1/BQ/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6I7O_2941/BQ/3063:3064,
1/BQ/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_6I7O_2951/BQ/3103:3107,
1/BQ/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_6I7O_2961/BQ/3164:3166,
1/BQ/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_6I7O_2971/BQ/3168:3170,
1/BQ/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_6I7O_2981/BQ/3177:3179,
1/BQ/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_6I7O_2991/BQ/3179:3188,
1/BQ/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_6I7O_3001/BQ/3193:3194,
1/BQ/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_6I7O_3011/BQ/3225:3229,
1/BQ/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_6I7O_3021/BQ/3233:3235,
1/BQ/3252:3254		Isolated non-canonical cWW pair
geometric
IL_5J7L_061
IL_87907.2
IL_6I7O_3031/BQ/3235:3238,
1/BQ/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_6I7O_3041/BQ/3300:3303,
1/BQ/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_6I7O_3051/BQ/3318:3320,
1/BQ/3387:3388		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_6I7O_3061/BQ/3324:3325,
1/BQ/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_6I7O_3071/BQ/3328:3330,
1/BQ/3373:3378		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6I7O_3081/BQ/3332:3337,
1/BQ/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_6I7O_3091/BQ/3340:3342,
1/BQ/3363:3364		Multiple bulged bases
geometric
IL_6IV9_001
IL_82107.4
IL_6I7O_3101/BQ/3342:3345,
1/BQ/3360:3363		Double sheared
geometric
IL_4V9F_100
IL_09705.15
IL_6I7O_3111/BQ/3349:3350,
1/BQ/3353:3356		Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_6I7O_3121/BR/15:16,
1/BR/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_6I7O_3131/BR/21:27,
1/BR/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6I7O_3141/BR/28:29,
1/BR/49:52		Minor groove platform
homologous
IL_5TBW_374
NA
IL_6I7O_3151/BR/29:30,
1/BR/47:49		Single stack bend
geometric
IL_5TBW_375
NA
IL_6I7O_3161/BR/32:36,
1/BR/41:45		Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_6I7O_3171/BR/72:80,
1/BR/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6I7O_3181/BR/84:87,
1/BR/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6I7O_3191/BS/64:66,
1/BS/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_6I7O_3201/BS/68:69,
1/BS/89:91		Single bulged U
homologous
IL_5TBW_146
NA
IL_6I7O_3221/YQ/7:8,
1/YS/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_6I7O_3231/YQ/13:15,
1/YS/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_6I7O_3241/YQ/27:28,
1/YQ/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_6I7O_3251/YQ/31:38,
1/YQ/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_6I7O_3261/YQ/82:89,
1/YQ/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_6I7O_3271/YQ/123:124,
1/YQ/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_6I7O_3281/YQ/125:127,
1/YQ/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_6I7O_3291/YQ/163:165,
1/YQ/257:258		Single stack bend
homologous
IL_5TBW_009
NA
IL_6I7O_5041/YQ/169:170,
1/YQ/248:253		No text annotation
IL_6I7O_3311/YQ/177:178,
1/YQ/238:241		No text annotation
geometric
IL_5TBW_501
NA
IL_6I7O_3321/YQ/189:191,
1/YQ/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_6I7O_3331/YQ/337:339,
1/YS/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6I7O_3341/YQ/376:379,
1/YQ/390:403		No text annotation
geometric
IL_5TBW_014
NA
IL_6I7O_3351/YQ/404:410,
1/YS/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6I7O_3361/YQ/429:431,
1/YQ/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_6I7O_3381/YQ/512:513,
1/YQ/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_6I7O_3391/YQ/517:525,
1/YQ/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_6I7O_3401/YQ/531:538,
1/YQ/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_6I7O_3411/YQ/668:670,
1/YQ/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_6I7O_3421/YQ/680:684,
1/YQ/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_6I7O_3431/YQ/725:728,
1/YQ/741:745		UAA/GAN
homologous
IL_5TBW_023
NA
IL_6I7O_3441/YQ/752:753,
1/YQ/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_6I7O_3451/YQ/755:756,
1/YQ/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_6I7O_3461/YQ/758:763,
1/YQ/768:773		No text annotation
homologous
IL_5TBW_026
NA
IL_6I7O_3471/YQ/803:805,
1/YQ/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6I7O_3481/YQ/805:809,
1/YQ/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6I7O_3491/YQ/828:829,
1/YQ/895:897		Single bulged A
homologous
IL_8C3A_031
NA
IL_6I7O_3501/YQ/833:834,
1/YQ/859:861		Single bulged G
homologous
IL_8C3A_032
NA
IL_6I7O_3511/YQ/834:838,
1/YQ/855:859		Triple sheared
homologous
IL_8C3A_033
NA
IL_6I7O_3521/YQ/869:872,
1/YQ/888:890		Major groove platform with extra cWW
homologous
IL_5TBW_031
NA
IL_6I7O_3531/YQ/873:875,
1/YQ/886:887		Single bulged U
homologous
IL_8C3A_035
NA
IL_6I7O_3541/YQ/907:909,
1/YQ/919:923		No text annotation
homologous
IL_8C3A_036
NA
IL_6I7O_3551/YQ/954:956,
1/YQ/965:967		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6I7O_3561/YQ/969:970,
1/YQ/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_6I7O_4861/YQ/977:981,
1/YQ/1102:1104		No text annotation
homologous
IL_8P9A_264
IL_25463.1
IL_6I7O_3581/YQ/983:985,
1/YQ/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_6I7O_3591/YQ/991:997,
1/YQ/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5TBW_038
NA
IL_6I7O_4871/YQ/991:998,
1/YQ/1050:1058		No text annotation
IL_6I7O_3601/YQ/997:998,
1/YQ/1050:1052		Minor groove platform
geometric
IL_6DLR_003
IL_51454.3
IL_6I7O_3611/YQ/999:1004,
1/YQ/1046:1049		C-loop with bulged stacked A's
homologous
IL_5TBW_040
NA
IL_6I7O_3621/YQ/1006:1009,
1/YQ/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6I7O_3631/YQ/1009:1011,
1/YQ/1039:1041		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_6I7O_5051/YQ/1014:1018,
1/YQ/1034:1036		No text annotation
IL_6I7O_3651/YQ/1069:1071,
1/YQ/1087:1089		Isolated non-canonical cWW pair
homologous
IL_8C3A_047
NA
IL_6I7O_3661/YQ/1074:1076,
1/YQ/1083:1084		Single bulged A
geometric
IL_5TBW_045
NA
IL_6I7O_3671/YQ/1120:1122,
1/YQ/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_6I7O_3691/YQ/1167:1171,
1/YQ/1328:1332		UAA/GAN
homologous
IL_5TBW_048
NA
IL_6I7O_3701/YQ/1173:1180,
1/YQ/1325:1326		SSU/LSU pseudoknot
homologous
IL_5TBW_049
NA
IL_6I7O_3711/YQ/1180:1182,
1/YQ/1324:1325		Single bulged U
geometric
IL_5TBW_050
NA
IL_6I7O_3721/YQ/1187:1194,
1/YQ/1314:1319		No text annotation
homologous
IL_5TBW_051
NA
IL_6I7O_3731/YQ/1194:1205,
1/YQ/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_6I7O_3741/YQ/1207:1209,
1/YQ/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_6I7O_3751/YQ/1218:1226,
1/YQ/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_6I7O_3761/YQ/1234:1238,
1/YQ/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_6I7O_3771/YQ/1262:1266,
1/YQ/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_6I7O_3781/YQ/1376:1378,
1/YQ/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_6I7O_3791/YQ/1385:1387,
1/YQ/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_6I7O_3801/YQ/1388:1395,
1/YQ/1415:1419		Kink-turn
homologous
IL_8C3A_063
NA
IL_6I7O_3811/YQ/1398:1400,
1/YQ/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_6I7O_3821/YQ/1444:1450,
1/YQ/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_6I7O_3831/YQ/1492:1495,
1/YQ/1835:1836		Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_50694.7
IL_6I7O_4901/YQ/1501:1505,
1/YQ/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_6I7O_3851/YQ/1532:1536,
1/YQ/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6I7O_3861/YQ/1618:1621,
1/YQ/1824:1826		No text annotation
homologous
IL_8C3A_070
NA
IL_6I7O_4911/YQ/1623:1624,
1/YQ/1819:1822		No text annotation
homologous
IL_8C3A_483
NA
IL_6I7O_3881/YQ/1627:1631,
1/YQ/1811:1816		No text annotation
homologous
IL_8C3A_072
NA
IL_6I7O_3891/YQ/1645:1649,
1/YQ/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_6I7O_3901/YQ/1661:1663,
1/YQ/1786:1788		Isolated non-canonical cWW pair
homologous
IL_5TBW_068
NA
IL_6I7O_3911/YQ/1669:1670,
1/YQ/1778:1780		Single bulged C
geometric
IL_5TBW_069
NA
IL_6I7O_3921/YQ/1670:1671,
1/YQ/1776:1778		Single stack bend
homologous
IL_8C3A_076
NA
IL_6I7O_3931/YQ/1694:1698,
1/YQ/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_6I7O_3941/YQ/1702:1707,
1/YQ/1737:1743		No text annotation
homologous
IL_8C3A_078
NA
IL_6I7O_3951/YQ/1711:1717,
1/YQ/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_6I7O_3961/YQ/1883:1889,
1/YQ/2346:2349		No text annotation
homologous
IL_5TBW_074
NA
IL_6I7O_3971/YQ/1895:1897,
1/YQ/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_6I7O_3981/YQ/1898:1901,
1/YQ/2336:2337		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6I7O_4921/YQ/1898:1906,
1/YQ/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_6I7O_3991/YQ/1901:1906,
1/YQ/2333:2336		Intercalated tWH
geometric
IL_4V9F_062
IL_76758.2
IL_6I7O_4001/YQ/1918:1923,
1/YQ/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_6I7O_4011/YQ/1940:1942,
1/YQ/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6I7O_4021/YQ/1947:1948,
1/YQ/2098:2101		No text annotation
homologous
IL_8C3A_086
NA
IL_6I7O_4031/YQ/2128:2129,
1/YQ/2323:2325		Single bulged A
homologous
IL_5TBW_082
NA
IL_6I7O_4041/YQ/2156:2161,
1/YQ/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6I7O_4051/YQ/2196:2199,
1/YQ/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_6I7O_4061/YQ/2200:2201,
1/YQ/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6I7O_4071/YQ/2204:2210,
1/YQ/2235:2238		No text annotation
IL_6I7O_4081/YQ/2211:2217,
1/YQ/2228:2234		No text annotation
homologous
IL_5TBW_088
NA
IL_6I7O_4091/YQ/2276:2277,
1/YQ/2307:2310		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_6I7O_4101/YQ/2277:2288,
1/YQ/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_6I7O_4111/YQ/2391:2394,
1/YQ/2986:2988		No text annotation
homologous
IL_8C3A_096
NA
IL_6I7O_4121/YQ/2396:2398,
1/YQ/2981:2984		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_6I7O_4131/YQ/2409:2411,
1/YQ/2811:2812		Single bulged U
homologous
IL_8C3A_098
NA
IL_6I7O_4141/YQ/2412:2413,
1/YQ/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6I7O_4151/YQ/2423:2425,
1/YQ/2604:2607		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_6I7O_5061/YQ/2520:2526,
1/YQ/2584:2587		No text annotation
homologous
IL_8CRE_106
IL_00555.1
IL_6I7O_4171/YQ/2614:2615,
1/YQ/2625:2627		Single bulged A
homologous
IL_8C3A_107
NA
IL_6I7O_4181/YQ/2666:2668,
1/YQ/2686:2690		No text annotation
homologous
IL_8C3A_108
NA
IL_6I7O_4191/YQ/2714:2716,
1/YQ/2740:2741		Single bulged A
geometric
IL_5WWT_001
IL_31462.6
IL_6I7O_4201/YQ/2718:2721,
1/YQ/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6I7O_4211/YQ/2770:2773,
1/YQ/2787:2788		Single stack bend with bulge
homologous
IL_5TBW_101
NA
IL_6I7O_4221/YQ/2823:2824,
1/YQ/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_6I7O_4931/YQ/2823:2826,
1/YQ/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_6I7O_4231/YQ/2824:2826,
1/YQ/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6I7O_4241/YQ/2826:2828,
1/YQ/2862:2863		Major groove platform
homologous
IL_5TBW_104
NA
IL_6I7O_4941/YQ/2828:2830,
1/YQ/2858:2862		Major groove minor groove platform with extra cWW
homologous
IL_8C3A_113
NA
IL_6I7O_4261/YQ/2835:2839,
1/YQ/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_6I7O_4271/YQ/2876:2877,
1/YQ/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_6I7O_4281/YQ/2879:2881,
1/YQ/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_6I7O_4291/YQ/2881:2882,
1/YQ/2940:2943		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6I7O_4301/YQ/2889:2891,
1/YQ/2912:2914		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_6I7O_4951/YQ/2889:2892,
1/YQ/2909:2914		No text annotation
homologous
IL_8P9A_338
IL_07469.2
IL_6I7O_4311/YQ/2891:2892,
1/YQ/2909:2912		Major groove platform with intercalation
homologous
IL_5TBW_111
NA
IL_6I7O_4321/YQ/2918:2920,
1/YQ/2926:2928		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_6I7O_4331/YQ/2960:2961,
1/YQ/2970:2972		Single bulged A
geometric
IL_1U9S_001
IL_31462.6
IL_6I7O_4341/YQ/3004:3007,
1/YQ/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_6I7O_4351/YQ/3012:3014,
1/YQ/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_6I7O_4361/YQ/3018:3025,
1/YQ/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_6I7O_4371/YQ/3047:3051,
1/YQ/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_6I7O_4381/YQ/3054:3059,
1/YQ/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6I7O_4391/YQ/3063:3064,
1/YQ/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_6I7O_4401/YQ/3103:3107,
1/YQ/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_6I7O_4411/YQ/3164:3166,
1/YQ/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_6I7O_4421/YQ/3168:3170,
1/YQ/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_6I7O_4431/YQ/3177:3179,
1/YQ/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_6I7O_4441/YQ/3179:3188,
1/YQ/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_6I7O_4451/YQ/3225:3229,
1/YQ/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_6I7O_4461/YQ/3233:3235,
1/YQ/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_6I7O_4471/YQ/3235:3238,
1/YQ/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_280D_001
IL_77658.1
IL_6I7O_4481/YQ/3300:3303,
1/YQ/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_6I7O_4491/YQ/3318:3320,
1/YQ/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_6I7O_4501/YQ/3324:3325,
1/YQ/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_6I7O_4511/YQ/3328:3330,
1/YQ/3373:3378		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6I7O_4521/YQ/3332:3337,
1/YQ/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_6I7O_4531/YQ/3340:3342,
1/YQ/3363:3364		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.4
IL_6I7O_4541/YQ/3342:3345,
1/YQ/3360:3363		Double sheared
geometric
IL_4V9F_100
IL_09705.15
IL_6I7O_4551/YQ/3349:3350,
1/YQ/3353:3356		Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_6I7O_4561/YR/15:16,
1/YR/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_6I7O_4571/YR/21:27,
1/YR/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6I7O_4581/YR/28:29,
1/YR/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_6I7O_4591/YR/29:30,
1/YR/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_6I7O_4601/YR/32:36,
1/YR/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6I7O_4611/YR/72:80,
1/YR/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6I7O_4621/YR/84:87,
1/YR/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6I7O_4631/YS/44:64,
1/YS/96:100		No text annotation
geometric
IL_5TBW_144
NA
IL_6I7O_4641/YS/64:66,
1/YS/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_6I7O_4651/YS/68:69,
1/YS/89:91		Single bulged U
homologous
IL_5TBW_146
NA
IL_6I7O_4661/m/10:12,
1/m/23:25		Isolated non-canonical cWW pair
geometric
IL_5TBW_046
NA

Problematic loops

#loop idProblemSequence
IL_6I7O_038Major groove minor groove platform with extra cWW
IL_6I7O_043Tandem non-canonical cWW pairs
IL_6I7O_468No text annotation
IL_6I7O_064Minor groove platform related
IL_6I7O_115No text annotation
IL_6I7O_128No text annotation
IL_6I7O_129Isolated non-canonical cWW pair
IL_6I7O_131Tandem non-canonical cWW pairs
IL_6I7O_158Tandem non-canonical cWW pairs
IL_6I7O_474Triple non-canonical cWW pairs
IL_6I7O_176No text annotation
IL_6I7O_475No text annotation
IL_6I7O_185No text annotation
IL_6I7O_186Major groove platform with extra pair
IL_6I7O_192Kink-turn related
IL_6I7O_212Kink-turn related
IL_6I7O_219No text annotation
IL_6I7O_478No text annotation
IL_6I7O_238No text annotation
IL_6I7O_241No text annotation
IL_6I7O_321No text annotation
IL_6I7O_485No text annotation
IL_6I7O_330No text annotation
IL_6I7O_337Kink-turn related
IL_6I7O_357Kink-turn related
IL_6I7O_364No text annotation
IL_6I7O_488No text annotation
IL_6I7O_489No text annotation
IL_6I7O_368No text annotation
IL_6I7O_384No text annotation
IL_6I7O_387No text annotation
IL_6I7O_416No text annotation
IL_6I7O_425No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6I7O_0011/2/41:42,
1/2/433:439,
1/2/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_6I7O_0621/2/41:48,
1/2/431:439,
1/2/464:466		No text annotation
homologous
J3_8C3A_083
NA
J3_6I7O_0631/2/213:228,
1/2/237:243,
1/2/250:252		No text annotation
J3_6I7O_0021/2/633:635,
1/2/861:865,
1/2/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6I7O_0641/2/633:635,
1/2/861:866,
1/2/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_6I7O_0031/2/760:763,
1/2/773:775,
1/2/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_6I7O_0041/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6I7O_0051/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_6I7O_0061/2/1161:1164,
1/2/1581:1587,
1/2/1609:1616		No text annotation
homologous
J3_4V88_035
NA
J3_6I7O_0071/2/1168:1171,
1/2/1468:1470,
1/2/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J3_6I7O_0081/2/1180:1187,
1/2/1198:1209,
1/2/1454:1458		No text annotation
geometric
J3_8C3A_040
NA
J3_6I7O_0091/2/1215:1220,
1/2/1263:1267,
1/2/1442:1448		No text annotation
homologous
J3_4V88_038
NA
J3_6I7O_0921/2/1283:1288,
1/2/1327:1332,
1/2/1419:1424		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_6I7O_0111/2/1293:1294,
1/2/1303:1306,
1/2/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_6I7O_0121/2/1336:1338,
1/2/1386:1389,
1/2/1412:1415		No text annotation
homologous
J3_4V88_040
NA
J3_6I7O_0671/2/1336:1338,
1/2/1386:1391,
1/2/1407:1415		No text annotation
homologous
J3_8P9A_083
J3_88233.1
J3_6I7O_0131/2/1470:1474,
1/2/1533:1540,
1/2/1571:1574		No text annotation
homologous
J3_4V88_041
NA
J3_6I7O_0141/2b/41:42,
1/2b/433:439,
1/2b/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_6I7O_0681/2b/41:48,
1/2b/431:439,
1/2b/464:466		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_6I7O_0691/2b/213:228,
1/2b/237:243,
1/2b/250:252		No text annotation
J3_6I7O_0151/2b/633:635,
1/2b/861:865,
1/2b/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6I7O_0701/2b/633:635,
1/2b/861:866,
1/2b/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_6I7O_0161/2b/760:763,
1/2b/773:775,
1/2b/785:790		No text annotation
homologous
J3_8C3A_035
NA
J3_6I7O_0171/2b/881:884,
1/2b/928:936,
1/2b/943:947		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_6I7O_0181/2b/1037:1039,
1/2b/1079:1083,
1/2b/1090:1094		No text annotation
homologous
J3_8C3A_037
NA
J3_6I7O_0191/2b/1161:1164,
1/2b/1581:1587,
1/2b/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_6I7O_0201/2b/1168:1171,
1/2b/1468:1470,
1/2b/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J3_6I7O_0711/2b/1168:1172,
1/2b/1467:1470,
1/2b/1574:1577		No text annotation
J3_6I7O_0211/2b/1180:1187,
1/2b/1198:1209,
1/2b/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_6I7O_0221/2b/1215:1220,
1/2b/1263:1267,
1/2b/1442:1448		No text annotation
homologous
J3_8C3A_041
NA
J3_6I7O_0231/2b/1283:1288,
1/2b/1327:1332,
1/2b/1419:1424		No text annotation
homologous
J3_8P9A_080
J3_99563.1
J3_6I7O_0241/2b/1293:1294,
1/2b/1303:1306,
1/2b/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_6I7O_0251/2b/1336:1338,
1/2b/1386:1389,
1/2b/1412:1415		No text annotation
homologous
J3_8C3A_043
NA
J3_6I7O_0721/2b/1336:1338,
1/2b/1386:1391,
1/2b/1407:1415		No text annotation
homologous
J3_8P9A_083
J3_88233.1
J3_6I7O_0261/2b/1470:1474,
1/2b/1533:1540,
1/2b/1571:1574		No text annotation
homologous
J3_8C3A_044
NA
J3_6I7O_0271/BQ/113:123,
1/BQ/149:158,
1/BQ/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_6I7O_0731/BQ/113:124,
1/BQ/144:158,
1/BQ/263:267		No text annotation
J3_6I7O_0741/BQ/185:189,
1/BQ/205:214,
1/BQ/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_6I7O_0751/BQ/340:356,
1/BQ/363:368,
1/BS/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_6I7O_0281/BQ/369:376,
1/BQ/403:404,
1/BS/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6I7O_0761/BQ/369:379,
1/BQ/390:404,
1/BS/19:20		No text annotation
homologous
J3_8P9A_047
J3_92134.2
J3_6I7O_0291/BQ/502:503,
1/BQ/588:597,
1/BQ/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_6I7O_0301/BQ/814:820,
1/BQ/905:907,
1/BQ/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_6I7O_0311/BQ/829:831,
1/BQ/863:867,
1/BQ/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_6I7O_0321/BQ/986:987,
1/BQ/1062:1066,
1/BQ/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_6I7O_0331/BQ/1230:1232,
1/BQ/1256:1262,
1/BQ/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_6I7O_0341/BQ/1479:1485,
1/BQ/1857:1859,
1/BQ/1871:1874		No text annotation
homologous
J3_5TBW_008
NA
J3_6I7O_0351/BQ/1488:1491,
1/BQ/1837:1843,
1/BQ/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_6I7O_0361/BQ/1526:1531,
1/BQ/1591:1595,
1/BQ/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_6I7O_0771/BQ/1537:1542,
1/BQ/1551:1560,
1/BQ/1579:1584		No text annotation
J3_6I7O_0371/BQ/1631:1632,
1/BQ/1641:1645,
1/BQ/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_6I7O_0781/BQ/1654:1658,
1/BQ/1791:1792,
1/BQ/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6I7O_0381/BQ/2432:2435,
1/BQ/2512:2517,
1/BQ/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_6I7O_0791/BQ/2529:2532,
1/BQ/2547:2563,
1/BQ/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_6I7O_0801/BQ/2651:2653,
1/BQ/2754:2765,
1/BQ/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_6I7O_0401/BQ/2664:2666,
1/BQ/2690:2692,
1/BQ/2701:2706		No text annotation
homologous
J3_5TBW_013
NA
J3_6I7O_0411/BQ/2886:2889,
1/BQ/2914:2916,
1/BQ/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_6I7O_0811/BQ/3171:3176,
1/BQ/3212:3220,
1/BQ/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_6I7O_0421/BQ/3298:3300,
1/BQ/3314:3318,
1/BQ/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_6I7O_0431/BR/9:14,
1/BR/66:67,
1/BR/111:112		No text annotation
homologous
J3_5TBW_045
NA
J3_6I7O_0441/BS/44:45,
1/BS/58:64,
1/BS/96:100		No text annotation
homologous
J3_8C3A_060
NA
J3_6I7O_0451/YQ/113:123,
1/YQ/149:158,
1/YQ/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_6I7O_0821/YQ/113:124,
1/YQ/144:158,
1/YQ/263:267		No text annotation
J3_6I7O_0831/YQ/185:189,
1/YQ/205:214,
1/YQ/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_6I7O_0841/YQ/340:356,
1/YQ/363:368,
1/YS/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_6I7O_0461/YQ/369:376,
1/YQ/403:404,
1/YS/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6I7O_0851/YQ/369:379,
1/YQ/390:404,
1/YS/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_6I7O_0471/YQ/502:503,
1/YQ/588:597,
1/YQ/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_6I7O_0481/YQ/814:820,
1/YQ/905:907,
1/YQ/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_6I7O_0491/YQ/829:831,
1/YQ/863:867,
1/YQ/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_6I7O_0501/YQ/986:987,
1/YQ/1062:1066,
1/YQ/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_6I7O_0511/YQ/1230:1232,
1/YQ/1256:1262,
1/YQ/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_6I7O_0521/YQ/1479:1485,
1/YQ/1857:1859,
1/YQ/1871:1874		No text annotation
homologous
J3_5TBW_008
NA
J3_6I7O_0531/YQ/1488:1491,
1/YQ/1837:1843,
1/YQ/1852:1854		No text annotation
homologous
J3_8C3A_007
NA
J3_6I7O_0541/YQ/1526:1531,
1/YQ/1591:1595,
1/YQ/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_6I7O_0861/YQ/1537:1542,
1/YQ/1551:1560,
1/YQ/1579:1584		No text annotation
J3_6I7O_0551/YQ/1631:1632,
1/YQ/1641:1645,
1/YQ/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_6I7O_0871/YQ/1654:1658,
1/YQ/1791:1792,
1/YQ/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6I7O_0881/YQ/2432:2435,
1/YQ/2512:2516,
1/YQ/2591:2597		No text annotation
geometric
J3_4V9F_007
J3_97609.1
J3_6I7O_0571/YQ/2529:2532,
1/YQ/2547:2563,
1/YQ/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_28639.1
J3_6I7O_0891/YQ/2651:2653,
1/YQ/2754:2765,
1/YQ/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_6I7O_0581/YQ/2664:2666,
1/YQ/2690:2692,
1/YQ/2701:2706		No text annotation
homologous
J3_5TBW_013
NA
J3_6I7O_0591/YQ/2886:2889,
1/YQ/2914:2916,
1/YQ/2930:2936		No text annotation
homologous
J3_8C3A_011
NA
J3_6I7O_0901/YQ/3171:3176,
1/YQ/3212:3220,
1/YQ/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_6I7O_0601/YQ/3298:3300,
1/YQ/3314:3318,
1/YQ/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_6I7O_0611/YR/9:14,
1/YR/66:67,
1/YR/111:112		No text annotation
homologous
J3_5TBW_045
NA
J3_6I7O_0911/YS/44:45,
1/YS/58:64,
1/YS/96:100		No text annotation
homologous
J3_8P9A_067
J3_35667.2
J4_6I7O_0011/2/99:107,
1/2/307:309,
1/2/357:361,
1/2/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_6I7O_0021/2/622:624,
1/2/975:980,
1/2/1021:1032,
1/2/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_6I7O_0031/2b/99:107,
1/2b/307:309,
1/2b/357:361,
1/2b/383:384		No text annotation
homologous
J4_8P9A_021
J4_15241.1
J4_6I7O_0041/2b/622:624,
1/2b/975:980,
1/2b/1021:1032,
1/2b/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_6I7O_0051/BQ/112:113,
1/BQ/267:272,
1/BQ/293:299,
1/BQ/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6I7O_0061/BQ/185:189,
1/BQ/205:208,
1/BQ/212:214,
1/BQ/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_6I7O_0071/BQ/1451:1457,
1/BQ/1475:1476,
1/BQ/1877:1880,
1/BQ/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_6I7O_0081/BQ/1492:1496,
1/BQ/1520:1525,
1/BQ/1614:1615,
1/BQ/1829:1836		No text annotation
J4_6I7O_0091/BQ/1495:1496,
1/BQ/1520:1525,
1/BQ/1614:1615,
1/BQ/1829:1835		No text annotation
J4_6I7O_0101/BQ/1674:1675,
1/BQ/1693:1694,
1/BQ/1752:1753,
1/BQ/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_6I7O_0111/BQ/2130:2134,
1/BQ/2146:2150,
1/BQ/2186:2190,
1/BQ/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6I7O_0121/BQ/2192:2194,
1/BQ/2248:2249,
1/BQ/2267:2276,
1/BQ/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_6I7O_0131/BQ/2654:2658,
1/BQ/2712:2714,
1/BQ/2741:2742,
1/BQ/2751:2753		No text annotation
J4_6I7O_0141/BQ/2654:2658,
1/BQ/2712:2716,
1/BQ/2740:2742,
1/BQ/2751:2753		No text annotation
homologous
J4_8C3A_008
NA
J4_6I7O_0151/BQ/3010:3012,
1/BQ/3042:3043,
1/BQ/3098:3100,
1/BQ/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_6I7O_0161/YQ/112:113,
1/YQ/267:272,
1/YQ/293:299,
1/YQ/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6I7O_0171/YQ/185:189,
1/YQ/205:208,
1/YQ/212:214,
1/YQ/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_6I7O_0181/YQ/1451:1457,
1/YQ/1475:1476,
1/YQ/1877:1880,
1/YQ/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_6I7O_0191/YQ/1492:1496,
1/YQ/1520:1525,
1/YQ/1614:1615,
1/YQ/1829:1836		No text annotation
J4_6I7O_0201/YQ/1495:1496,
1/YQ/1520:1525,
1/YQ/1614:1615,
1/YQ/1829:1835		No text annotation
J4_6I7O_0211/YQ/1674:1675,
1/YQ/1693:1694,
1/YQ/1752:1753,
1/YQ/1772:1773		No text annotation
homologous
J4_8P9A_016
J4_24280.2
J4_6I7O_0221/YQ/2130:2134,
1/YQ/2146:2150,
1/YQ/2186:2190,
1/YQ/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6I7O_0231/YQ/2192:2194,
1/YQ/2248:2249,
1/YQ/2267:2276,
1/YQ/2310:2315		No text annotation
homologous
J4_8C3A_007
NA
J4_6I7O_0241/YQ/2654:2658,
1/YQ/2712:2714,
1/YQ/2741:2742,
1/YQ/2751:2753		No text annotation
J4_6I7O_0251/YQ/2654:2658,
1/YQ/2712:2716,
1/YQ/2740:2742,
1/YQ/2751:2753		No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_6I7O_0261/YQ/3010:3012,
1/YQ/3042:3043,
1/YQ/3098:3100,
1/YQ/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_6I7O_0271/m/7:10,
1/m/25:27,
1/m/43:48,
1/m/64:65		No text annotation
J4_6I7O_0281/m/7:12,
1/m/23:27,
1/m/43:48,
1/m/64:65		No text annotation
J4_6I7O_0291/mb/7:10,
1/mb/26:28,
1/mb/44:50,
1/mb/66:67		No text annotation
homologous
J4_6UFG_001
J4_70449.28
J4_6I7O_0301/n/7:10,
1/n/25:27,
1/n/43:49,
1/n/65:66		No text annotation
homologous
J4_6CFJ_015
J4_70449.28
J4_6I7O_0311/nb/7:10,
1/nb/25:28,
1/nb/42:49,
1/nb/65:66		No text annotation
homologous
J4_4RDX_001
NA
J5_6I7O_0011/2/31:35,
1/2/473:479,
1/2/509:516,
1/2/536:546,
1/2/592:595		No text annotation
J5_6I7O_0021/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:411,
1/2/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_6I7O_0031/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:265,
1/2/289:293		No text annotation
J5_6I7O_0041/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:267,
1/2/288:293		No text annotation
J5_6I7O_0051/2/636:641,
1/2/693:699,
1/2/739:744,
1/2/807:817,
1/2/854:860		No text annotation
J5_6I7O_0061/2b/31:35,
1/2b/473:479,
1/2b/509:516,
1/2b/536:546,
1/2b/592:595		No text annotation
J5_6I7O_0071/2b/54:57,
1/2b/90:97,
1/2b/386:388,
1/2b/409:411,
1/2b/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_6I7O_0081/2b/124:143,
1/2b/172:182,
1/2b/203:204,
1/2b/263:265,
1/2b/289:293		No text annotation
J5_6I7O_0091/2b/124:143,
1/2b/172:182,
1/2b/203:204,
1/2b/263:267,
1/2b/288:293		No text annotation
J5_6I7O_0231/2b/636:642,
1/2b/692:698,
1/2b/740:744,
1/2b/807:822,
1/2b/850:860		No text annotation
J5_6I7O_0111/BQ/20:22,
1/BS/35:42,
1/BS/102:107,
1/BS/115:116,
1/BS/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_6I7O_0121/BQ/658:663,
1/BQ/799:802,
1/BQ/941:944,
1/BQ/1375:1376,
1/BQ/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_6I7O_0131/BQ/675:678,
1/BQ/702:706,
1/BQ/713:721,
1/BQ/749:751,
1/BQ/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_6I7O_0141/BQ/1906:1914,
1/BQ/1938:1939,
1/BQ/2109:2110,
1/BQ/2114:2122,
1/BQ/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_6I7O_0151/BQ/2399:2406,
1/BQ/2815:2823,
1/BQ/2867:2876,
1/BQ/2951:2957,
1/BQ/2975:2980		No text annotation
J5_6I7O_0161/BQ/2416:2419,
1/BQ/2611:2614,
1/BQ/2627:2628,
1/BQ/2650:2651,
1/BQ/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J5_6I7O_0171/YQ/20:22,
1/YS/35:42,
1/YS/102:107,
1/YS/115:116,
1/YS/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_6I7O_0181/YQ/658:663,
1/YQ/799:802,
1/YQ/941:944,
1/YQ/1375:1376,
1/YQ/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_6I7O_0191/YQ/675:678,
1/YQ/702:706,
1/YQ/713:721,
1/YQ/749:751,
1/YQ/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_6I7O_0201/YQ/1906:1914,
1/YQ/1938:1939,
1/YQ/2109:2110,
1/YQ/2114:2122,
1/YQ/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_6I7O_0211/YQ/2399:2406,
1/YQ/2815:2823,
1/YQ/2867:2876,
1/YQ/2951:2957,
1/YQ/2975:2980		No text annotation
J5_6I7O_0221/YQ/2416:2419,
1/YQ/2611:2614,
1/YQ/2627:2628,
1/YQ/2650:2651,
1/YQ/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_6I7O_0011/BQ/22:27,
1/BQ/58:68,
1/BQ/75:79,
1/BQ/106:110,
1/BQ/321:331,
1/BS/32:35		No text annotation
J6_6I7O_0021/BQ/2416:2419,
1/BQ/2611:2614,
1/BQ/2627:2628,
1/BQ/2650:2653,
1/BQ/2754:2765,
1/BQ/2793:2804		No text annotation
J6_6I7O_0031/YQ/22:27,
1/YQ/58:68,
1/YQ/75:79,
1/YQ/106:110,
1/YQ/321:331,
1/YS/32:35		No text annotation
J6_6I7O_0041/YQ/2416:2419,
1/YQ/2611:2614,
1/YQ/2627:2628,
1/YQ/2650:2653,
1/YQ/2754:2765,
1/YQ/2793:2804		No text annotation
J7_6I7O_0011/BQ/949:954,
1/BQ/967:968,
1/BQ/1114:1117,
1/BQ/1141:1146,
1/BQ/1157:1161,
1/BQ/1338:1339,
1/BQ/1365:1370		No text annotation
J7_6I7O_0021/YQ/949:954,
1/YQ/967:968,
1/YQ/1114:1117,
1/YQ/1141:1146,
1/YQ/1157:1161,
1/YQ/1338:1339,
1/YQ/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_6I7O_065No text annotation
J3_6I7O_066No text annotation
J3_6I7O_010No text annotation
J3_6I7O_039No text annotation
J3_6I7O_056No text annotation
J5_6I7O_010No text annotation

Coloring options:
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