HL_6I7O_041

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6I7O|1|2b|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_041 not in the Motif Atlas

Geometric match to HL_5J7L_171

Geometric discrepancy: 0.2351

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6I7O|1|2b|C|230
6I7O|1|2b|U|231
6I7O|1|2b|U|232
6I7O|1|2b|C|233
6I7O|1|2b|G|234
6I7O|1|2b|G|235

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains