HL_6I7O_049

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_049 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.3048

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6I7O|1|2b|C|491
6I7O|1|2b|A|492
6I7O|1|2b|U|493
6I7O|1|2b|U|494
6I7O|1|2b|C|495
6I7O|1|2b|G|496

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S28-A