HL_6I7O_067

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_067 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1854

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6I7O|1|2b|C|1359
6I7O|1|2b|A|1360
6I7O|1|2b|U|1361
6I7O|1|2b|U|1362
6I7O|1|2b|U|1363
6I7O|1|2b|G|1364

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Bb

40S ribosomal protein S5

Chain Fb

40S ribosomal protein S16-A

Chain Ib

40S ribosomal protein S19-A