HL_6I7O_068

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_068 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.2558

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6I7O|1|2b|U|1396
6I7O|1|2b|U|1397
6I7O|1|2b|U|1398
6I7O|1|2b|C|1399
6I7O|1|2b|A|1400
6I7O|1|2b|A|1401
6I7O|1|2b|G|1402

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Gb

40S ribosomal protein S17-A