HL_6I7O_096

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

6I7O|1|BQ|A|1025, 6I7O|1|BQ|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_096 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2124

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6I7O|1|BQ|U|1022
6I7O|1|BQ|C|1023
6I7O|1|BQ|G|1024
6I7O|1|BQ|A|1025
6I7O|1|BQ|A|1026
6I7O|1|BQ|A|1027
6I7O|1|BQ|U|1028
6I7O|1|BQ|G|1029
6I7O|1|BQ|A|1030

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A