HL_6I7O_108

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6I7O|1|BQ|U|1606, 6I7O|1|BQ|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_108 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0947

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6I7O|1|BQ|G|1599
6I7O|1|BQ|U|1600
6I7O|1|BQ|U|1601
6I7O|1|BQ|A|1602
6I7O|1|BQ|A|1603
6I7O|1|BQ|G|1604
6I7O|1|BQ|A|1605
6I7O|1|BQ|U|1606
6I7O|1|BQ|U|1607
6I7O|1|BQ|C|1608

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A