HL_6I7O_117

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAC

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_117 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.1961

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6I7O|1|BQ|G|1952
6I7O|1|BQ|G|1953
6I7O|1|BQ|A|2093
6I7O|1|BQ|C|2094

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A