HL_6I7O_120

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6I7O|1|BQ|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_120 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1111

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6I7O|1|BQ|A|2164
6I7O|1|BQ|G|2165
6I7O|1|BQ|A|2166
6I7O|1|BQ|A|2167
6I7O|1|BQ|A|2168
6I7O|1|BQ|G|2169
6I7O|1|BQ|U|2170

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A