HL_6I7O_126

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUUCAUUU

Length

8 nucleotides

Bulged bases

6I7O|1|BQ|C|2539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_126 not in the Motif Atlas

Geometric match to HL_8DP3_002

Geometric discrepancy: 0.3208

The information below is about HL_8DP3_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6I7O|1|BQ|A|2536
6I7O|1|BQ|U|2537
6I7O|1|BQ|U|2538
6I7O|1|BQ|C|2539
6I7O|1|BQ|A|2540
6I7O|1|BQ|U|2541
6I7O|1|BQ|U|2542
6I7O|1|BQ|U|2543

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BN

60S ribosomal protein L34-A

Chain Sb

40S ribosomal protein S4-A