HL_6I7O_133

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_133 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1286

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6I7O|1|BQ|U|2744
6I7O|1|BQ|G|2745
6I7O|1|BQ|A|2746
6I7O|1|BQ|A|2747
6I7O|1|BQ|A|2748
6I7O|1|BQ|G|2749

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A