HL_6I7O_141

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6I7O|1|BQ|G|3116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_141 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1304

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6I7O|1|BQ|C|3110
6I7O|1|BQ|U|3111
6I7O|1|BQ|G|3112
6I7O|1|BQ|A|3113
6I7O|1|BQ|A|3114
6I7O|1|BQ|C|3115
6I7O|1|BQ|G|3116
6I7O|1|BQ|C|3117
6I7O|1|BQ|C|3118
6I7O|1|BQ|U|3119
6I7O|1|BQ|C|3120
6I7O|1|BQ|U|3121
6I7O|1|BQ|A|3122
6I7O|1|BQ|A|3123
6I7O|1|BQ|G|3124

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A