HL_6I7O_144

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6I7O|1|BQ|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_144 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1238

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6I7O|1|BQ|G|3303
6I7O|1|BQ|U|3304
6I7O|1|BQ|A|3305
6I7O|1|BQ|U|3306
6I7O|1|BQ|A|3307
6I7O|1|BQ|C|3308
6I7O|1|BQ|G|3309
6I7O|1|BQ|A|3310
6I7O|1|BQ|C|3311

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A