HL_6I7O_154
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_154 not in the Motif Atlas
- Homologous match to HL_8C3A_003
- Geometric discrepancy: 0.1636
- The information below is about HL_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
6I7O|1|YQ|C|90
6I7O|1|YQ|G|91
6I7O|1|YQ|G|92
6I7O|1|YQ|C|93
6I7O|1|YQ|G|94
6I7O|1|YQ|A|95
6I7O|1|YQ|G|96
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XJ
- 60S ribosomal protein L13-A
- Chain XP
- 60S ribosomal protein L42-A
- Chain XR
- 60S ribosomal protein L28
- Chain YB
- 60S ribosomal protein L18-A
- Chain mb
- Transfer RNA; tRNA
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