HL_6I7O_156
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 6I7O|1|YQ|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_156 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.1414
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
6I7O|1|YQ|U|194
6I7O|1|YQ|U|195
6I7O|1|YQ|G|196
6I7O|1|YQ|G|197
6I7O|1|YQ|A|198
6I7O|1|YQ|A|199
6I7O|1|YQ|C|200
6I7O|1|YQ|A|201
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XK
- 60S ribosomal protein L26-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YG
- 60S ribosomal protein L32
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