HL_6I7O_167

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_167 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1089

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6I7O|1|YQ|U|707
6I7O|1|YQ|G|708
6I7O|1|YQ|A|709
6I7O|1|YQ|A|710
6I7O|1|YQ|A|711
6I7O|1|YQ|G|712

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XC

60S ribosomal protein L36-A

Chain XJ

60S ribosomal protein L13-A

Chain XR

60S ribosomal protein L28

Chain YB

60S ribosomal protein L18-A