HL_6I7O_185
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GCCUGCAGGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_185 not in the Motif Atlas
- Geometric match to HL_1QF6_001
- Geometric discrepancy: 0.3712
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6I7O|1|YQ|G|1561
6I7O|1|YQ|C|1562
6I7O|1|YQ|C|1563
6I7O|1|YQ|U|1564
6I7O|1|YQ|G|1573
6I7O|1|YQ|C|1574
6I7O|1|YQ|A|1575
6I7O|1|YQ|G|1576
6I7O|1|YQ|G|1577
6I7O|1|YQ|C|1578
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XA
- 60S ribosomal protein L8-A
- Chain XH
- 60S ribosomal protein L25
- Chain XW
- 60S ribosomal protein L2-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: