HL_6I7O_190

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6I7O|1|YQ|C|1761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_190 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2327

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6I7O|1|YQ|C|1759
6I7O|1|YQ|A|1760
6I7O|1|YQ|C|1761
6I7O|1|YQ|C|1762
6I7O|1|YQ|U|1763
6I7O|1|YQ|U|1764
6I7O|1|YQ|U|1765
6I7O|1|YQ|G|1766

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain YF

60S ribosomal protein L19-A

Chain YL

60S ribosomal protein L22-A