HL_6I7O_208

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_208 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.26

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6I7O|1|YQ|A|2673
6I7O|1|YQ|A|2674
6I7O|1|YQ|C|2675
6I7O|1|YQ|A|2676
6I7O|1|YQ|G|2677
6I7O|1|YQ|A|2678
6I7O|1|YQ|A|2679
6I7O|1|YQ|A|2680
6I7O|1|YQ|U|2681

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XG

60S ribosomal protein L11-B

Chain nb

Transfer RNA; tRNA