HL_6I7O_209

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_209 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1188

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6I7O|1|YQ|C|2693
6I7O|1|YQ|A|2694
6I7O|1|YQ|A|2695
6I7O|1|YQ|A|2696
6I7O|1|YQ|A|2697
6I7O|1|YQ|G|2698
6I7O|1|YQ|G|2699
6I7O|1|YQ|G|2700

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XP

60S ribosomal protein L42-A

Chain YD

60S ribosomal protein L10

Chain YJ

60S ribosomal protein L21-A