HL_6I7O_220

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

6I7O|1|YQ|U|3195, 6I7O|1|YQ|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_220 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3011

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6I7O|1|YQ|C|3193
6I7O|1|YQ|C|3194
6I7O|1|YQ|U|3195
6I7O|1|YQ|U|3196
6I7O|1|YQ|G|3197
6I7O|1|YQ|U|3198
6I7O|1|YQ|G|3199

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XD

60S ribosomal protein L9-A

Chain XM

60S ribosomal protein L14-A

Chain XU

60S ribosomal protein L16-A