HL_6I7O_223

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

6I7O|1|YQ|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_223 not in the Motif Atlas

Geometric match to HL_7A0S_039

Geometric discrepancy: 0.1145

The information below is about HL_7A0S_039

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6I7O|1|YQ|C|3350
6I7O|1|YQ|U|3351
6I7O|1|YQ|U|3352
6I7O|1|YQ|G|3353

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A

Chain YL

60S ribosomal protein L22-A