HL_6I7O_238

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6I7O|1|nb|U|16, 6I7O|1|nb|C|17, 6I7O|1|nb|G|18, 6I7O|1|nb|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_238 not in the Motif Atlas

Homologous match to HL_6GSK_217

Geometric discrepancy: 0.5654

The information below is about HL_6GSK_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|nb|C|13
6I7O|1|nb|A|14
6I7O|1|nb|G|15
6I7O|1|nb|U|16
6I7O|1|nb|C|17
6I7O|1|nb|G|18
6I7O|1|nb|G|19
6I7O|1|nb|U|20
6I7O|1|nb|A|21
6I7O|1|nb|G|22

Current chains

Chain nb

A/P hybrid tRNA

Nearby chains

Chain Eb

40S ribosomal protein S15

Chain XG

60S ribosomal protein L11-B

Chain YQ

Large subunit ribosomal RNA; LSU rRNA