HL_6I7O_241

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

6I7O|1|2|U|779, 6I7O|1|2|U|781, 6I7O|1|2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2|G|776
6I7O|1|2|C|777
6I7O|1|2|G|778
6I7O|1|2|U|779
6I7O|1|2|A|780
6I7O|1|2|U|781
6I7O|1|2|U|782
6I7O|1|2|G|783
6I7O|1|2|C|784

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain d

40S ribosomal protein S24-A