HL_6I7O_249

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6I7O|1|2b|U|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_249 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.261

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6I7O|1|2b|A|829
6I7O|1|2b|U|830
6I7O|1|2b|U|831
6I7O|1|2b|U|832
6I7O|1|2b|U|833
6I7O|1|2b|G|834
6I7O|1|2b|U|835
6I7O|1|2b|U|836
6I7O|1|2b|G|837
6I7O|1|2b|G|838
6I7O|1|2b|U|839
6I7O|1|2b|U|840
6I7O|1|2b|U|841
6I7O|1|2b|C|842
6I7O|1|2b|U|843

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Xb

40S ribosomal protein S11-A