HL_6I7V_087

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6I7V|1|CA|U|958, 6I7V|1|CA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_087 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.13

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6I7V|1|CA|U|955
6I7V|1|CA|G|956
6I7V|1|CA|C|957
6I7V|1|CA|U|958
6I7V|1|CA|A|959
6I7V|1|CA|A|960
6I7V|1|CA|C|961
6I7V|1|CA|G|962

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CN

50S ribosomal protein L16