HL_6I7V_106

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6I7V|1|CA|A|1780, 6I7V|1|CA|U|1781, 6I7V|1|CA|U|1782, 6I7V|1|CA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_106 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1351

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6I7V|1|CA|U|1777
6I7V|1|CA|U|1778
6I7V|1|CA|U|1779
6I7V|1|CA|A|1780
6I7V|1|CA|U|1781
6I7V|1|CA|U|1782
6I7V|1|CA|A|1783
6I7V|1|CA|A|1784
6I7V|1|CA|A|1785
6I7V|1|CA|A|1786
6I7V|1|CA|A|1787

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2