HL_6I7V_117

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_117 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1451

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6I7V|1|CA|U|2324
6I7V|1|CA|G|2325
6I7V|1|CA|C|2326
6I7V|1|CA|A|2327
6I7V|1|CA|A|2328
6I7V|1|CA|U|2329
6I7V|1|CA|G|2330
6I7V|1|CA|G|2331

Current chains

Chain CA

23S ribsomal RNA

Nearby chains

Chain CF

50S ribosomal protein L5

Chain CN

50S ribosomal protein L16

Chain CX

50S ribosomal protein L27