HL_6I7V_143

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6I7V|1|DA|G|329, 6I7V|1|DA|A|330, 6I7V|1|DA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_143 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1144

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6I7V|1|DA|G|327
6I7V|1|DA|U|328
6I7V|1|DA|G|329
6I7V|1|DA|A|330
6I7V|1|DA|C|331
6I7V|1|DA|A|332
6I7V|1|DA|G|333
6I7V|1|DA|C|334
6I7V|1|DA|C|335

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DV

50S ribosomal protein L24