HL_6I7V_164

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_164 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.091

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6I7V|1|DA|G|1281
6I7V|1|DA|U|1282
6I7V|1|DA|G|1283
6I7V|1|DA|A|1284
6I7V|1|DA|A|1285
6I7V|1|DA|A|1286
6I7V|1|DA|A|1287
6I7V|1|DA|G|1288
6I7V|1|DA|C|1289

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DO

50S ribosomal protein L17

Chain DT

50S ribosomal protein L22