HL_6I7V_180

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6I7V|1|DA|A|1913, 6I7V|1|DA|C|1914, 6I7V|1|DA|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7V_180 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.1207

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6I7V|1|DA|G|1910
6I7V|1|DA|PSU|1911
6I7V|1|DA|A|1912
6I7V|1|DA|A|1913
6I7V|1|DA|C|1914
6I7V|1|DA|3TD|1915
6I7V|1|DA|A|1916
6I7V|1|DA|PSU|1917
6I7V|1|DA|A|1918
6I7V|1|DA|A|1919
6I7V|1|DA|C|1920

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA